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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6540_PI390587928Hv_44K_v2CTGTCAGTTATTACATGATTTATGTCTGGAACAATTGAGTTTGTCCTTTGTACCATTCTG1609GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1720.1860.5361.8351.6902.811
Raw 61.472110.250276.9261440.680471.821852.495



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_7150.617642e-241649 - 170810060 / 60plus ABC10669
MLOCMLOC_7150.130562e-241234 - 129310060 / 60minus ABC10669 ABC14994
MLOCMLOC_7150.426622e-24842 - 90110060 / 60minus ABC10669 ABC14994
JLOC1JLOC1_4711.226578e-251700 - 175910060 / 60plus
Harvest21ABC1066917173e-251611 - 167010060 / 60plusABC10669
Harvest35U35_440817163e-251610 - 166910060 / 60plus



Contig Sequence (1716 bp)

>U35_4408 1716 Hv_44K_v2
CCAAGAACCAACAAACCAAGCCTGCCACCCACTCCTCCCAGGCCGCCGCTTGATCCCCCG
CCCGCCGTCGTCGCGGCGATGTCTCCCGCCTCCGCGCGCGCCCTCACCGTCGACTCCCTC
AACCCAAAGGTGCTGGCGCTCTCGGATCACCTCGGGGGCGCCGTGGCCCGCCGCGCGCAG
CGCATGCAGAAAGAGCTAGAAACAAATCCAGGTGTATACCCTTTCAATGAGATAATCTAT
TGCAACCTTAGCAATCCACATTACCTCGGACAACAGCCAATTAAGTTCTTCCGTGAGGTT
CTTGCCTTGTGTGATTACCCGCATCTTCTAAACTGCAGTGTAACTAGTTCCATATTCAGT
TCTGATGCAATAACAAGGGCAAGAGAGATATTAGACCTCATTCCTGGGAGAGCAATGGGA
GGATACAGCCACTGTCAGGGTACTGAAGGGTTGCGAAATGCAATTGCTGCTGGAATAGCC
ACTCGTGATGCTTTCCCATGCAATGCGGAGGACATTTTCCTGACAGATGGAGCATCCGCG
CCGGTTCATATGGTAATGCACCTATTGATACGAGATGAAAAAGACGGCATCCTTTGCCCA
ATTCCATCACACTTTCTGTACACAAGCTCAATGATCCTGTGTGGTGCTACTCTTGTACCA
TATTACCTTGACGAATCACGAGATTGGGATGTGAGTATTTCGGACCTCAAGAAGCAGCTG
GATGGTGCCCGATCTCAGGGCATCAATGTTAGGGGACTTGTGGTTGTAAATCCAGGCAAC
CCTACTGGACAGGTTCTTGTGCGGGAAAACCAGTGTGAAATAGTGGAATTCTGCAGGAAT
GAAAACCTTGTTCTTCTAGCAGATGAGGTTTACCAAGAAAATGTTTACACAGATGAAAAG
AAATTTATCTCTTTCAAGAAGATAGCACGGTCCATGGGTTTTGGTGAAGGAGATGTTTCC
TTAATATCATTCCATTCAGTTTCTAATGGGTACTATGGAGAATGTGGGAGAAGAGGGGGT
TACATGGAGGTCACTGGCTTCAATTCTGAAGTTCGGAAACAAGTATACAAAGTAGCATCC
CTAAGCTCATGCTCCAACTTAGCCGGCCAGGTCCTCGTGAGCCTAGTCATGAACCCACCA
AAGGTTGGAGATGAGTCATACACCTCTTACCGGGAAGAAAGAGATCGCATTATGTTATCA
TTATCCCGGTGTGCAGAGGCCATGGTGCAGGCATTCAACAGTCTGGAAGGCCTGACTTGC
AGCAAGGCTGAAGGGGCAATGTTTGTATTCCCATCTGTTCGGCTGCCTAAAAGGGCAATT
GCGTCTGCTGAGGCAATGAACACCAAACCAGATGTGTTCTACGCTCTCCGCCTTCTTGAA
AACACTGGCATCATCGTCTTGCCTGGTTCTGTGTTCGGACAAGTACCTGGCACATGGCAT
TTCAGATGCACAATCCTGCAACAGGAGGAGAAGGTACAGCTGATCATCTGTCGCTTTAAG
GCGTTCCATGAAGCTTTCATGGAAGAATTTCGCGATTAAAAGTCGCCGGCTTATGTTATC
TGTAGCACAACTTAGAAAGTCCGGACAGACAAATACATGAGCTTTGTAACTGTCAGTTAT
TACATGATTTATGTCTGGAACAATTGAGTTTGTCCTTTGTACCATTCTGAAGTTAATCTA
AACTTATCCTTTTCAAAACAAAAAAAAAAAAAAAAA



Homology of Contig U35_4408 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g25140.15470.0protein|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2Bradi5g20427.23980.0
Arabidopsis v10AT1G17290.15430.0| Symbols: AlaAT1 | alanine aminotransferas | chr1:5922771-5926093 FORWARD LENGTH=543