barSeed - Barley Seed Development Database

Probe ABC09965

Source Contig ABC09965

barSeed

Links

Affymetrix Source Sequence (1363 bp)

>ABC09965 1363
GGCAGTTGGTGCTGAGGTGAACGGCATCGGTACTGCACTTTTGTACAAGAGTGAAGACTT
TATGAATTGGACTAGAATTGAACGCCCGCTGTATTCAAACAATGCCCTCAATATGTGGGA
GTGCCTAGATTTCTTCGCGGTATTGCCGGGAAGTAACAATGGACTAGACATGTCTTCAGA
AATTCCTAGTGGCGCCAAGCATGTCCTCAAAGTGAGCATCAATTCCTGTGACATGTACAT
AATTGGGGTGTATGATCTCAAACGTGATGCCTTTGTGCCAGACACCGTCCAAGATGACAA
TCGGCTGTGGTTGAGGATTGATTATGGTACTTTCTATGCTTCAAAATCATTCTTTGACTC
CAAAAAGGGTAGGAGAGTCATATGGGCTTGGAGTAACGAGACAGACAGTACTTCAGATGA
TATTGCAAAAGGCTGGGCAGGAATCCATTCAATCCCCAGGAAAATTTGGTTAGACAGCGA
TGGCAAGCAGTTGCTGCAATGGCCAGTTGAAGAGATTGAGTCCCTTCGAATAAATGAAAT
CAACCATCAAGGACTAGAGCTGAAGAAGGGAGATATATTTGAGATTAAGGGAATCGACAC
TTTGCAGGCTGACGTTGAGATAGAGTTTGAGCCAACGTCCATCGATGATGCCGAACCTTT
TGATCCTTCCTGGCTTTTTGACCCCCGGAAGCATTGCCGGGAGGCGGATGCATCGGTTCA
TGGTGGCATAGGGCCATTTGGACTTGTTATTCTGGCCTCCGACAACATGGAGGAGCACAC
TGCAGTGCACTTCAGGGTTTACAAATCACAGCAAAAGTACATGATCCTCATGTGCTCCGA
CCTAAGAAGGTCTTCCCTGAGACCAGGACTGTACACACCAGCCTATGGAGGCTTCTTTGA
ATTTGACCTTGAAAAGGAAAGAAAGATATCCCTCAGGACTCTGATTGATAGGTCCGCCGT
GGAGAGCTTCGGCAGCGGTGGCAGGATCTGCATCACGGCCAGAGTTTATCCGGTGGCACT
TGTCGATGACGGCGCCACCCACATGTATGCTTTCAACAATGGAAGTACCACGGTCAGAGT
GCCGCAACTAAGGGCATGGAGCATGAAAAAAGCACAAGTGAATGTGATGAAGGGTGGAAA
TGTGATCGATGCTTAGCACAAAAGAGCAATTCTAGTCAGTCGTGTGATTGAAAGACTGGC
CACGCACTTGTTCATTTCAATATTTACCATGTGTATTTGAACTTTTGAAGTAGTGGCAAT
TGGTAAGTAAGACTAGTGCTTGTTGCCACCAACGATTTAAATTCGCAGAGGTTTGGAGTA
AACAATATTAGCTTGTGCATGCCAGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_50007.2	2163	0.0	38 - 1384	99	1344 / 1348	CUST_27720_PI390587928 CUST_17860_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_50007.1	5234	0.0	69 - 1415	99	1344 / 1348	CUST_27720_PI390587928 CUST_17860_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_50007.4	2365	0.0	11 - 1357	99	1344 / 1348	CUST_17860_PI390587928 CUST_27720_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_50007.3	2347	0.0	26 - 1372	99	1344 / 1348	CUST_17860_PI390587928 CUST_27720_PI390587928	ABC07811 ABC09965 ABC43005
AK251008.1	2093	0.0	757 - 2093	99	1335 / 1337	CUST_17860_PI390587928 CUST_27720_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_50007.5	1789	0.0	1 - 1280	99	1277 / 1281	None	ABC07811 ABC09965 ABC43005
MLOC_50007.6	1482	0.0	1 - 982	99	980 / 982	None	ABC07811 ABC09965 ABC43005
MLOC_50007.7	2136	0.0	1 - 973	99	970 / 974	CUST_27720_PI390587928	ABC07811 ABC09965 ABC43005
AK356300	2370	0.0	963 - 2082	86	965 / 1125	None	ABC07811 ABC09965 ABC43005
AK249550.1	2033	0.0	757 - 1875	86	965 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_57254.8	1958	0.0	646 - 1831	84	1010 / 1201	CUST_2022_PI390587928 CUST_26684_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_59070.1	3736	0.0	296 - 1415	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.8	3824	0.0	251 - 1370	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.4	3226	0.0	291 - 1410	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.3	3274	0.0	291 - 1410	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.2	3929	0.0	296 - 1415	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.7	2298	0.0	266 - 1385	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.6	2053	0.0	266 - 1385	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_59070.5	3630	0.0	288 - 1407	85	958 / 1125	None	ABC07811 ABC09965 ABC43005
MLOC_57254.9	1958	0.0	519 - 1704	84	1009 / 1201	CUST_2022_PI390587928 CUST_26684_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_57254.1	3652	0.0	2237 - 3422	84	1009 / 1201	CUST_2022_PI390587928 CUST_26684_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_57254.7	2663	0.0	1242 - 2427	84	1009 / 1201	CUST_2022_PI390587928 CUST_26684_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_57254.3	3179	0.0	1817 - 3002	84	1009 / 1201	CUST_2022_PI390587928 CUST_26684_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_57254.2	3769	0.0	2406 - 3591	84	1009 / 1201	CUST_26684_PI390587928 CUST_2022_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_57254.4	3491	0.0	2052 - 3237	84	1009 / 1201	CUST_26684_PI390587928 CUST_2022_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
AK252358.1	2112	0.0	746 - 1884	84	959 / 1141	CUST_39722_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_71313.2	1831	0.0	516 - 1655	84	954 / 1141	None	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_72559.1	1813	0.0	639 - 1656	84	853 / 1019	CUST_7829_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_72559.2	1837	0.0	705 - 1722	84	853 / 1019	CUST_7829_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_50007.8	837	0.0	1 - 457	99	456 / 458	None	ABC07811 ABC09965
MLOC_71313.4	1834	2e-71	1360 - 1638	84	235 / 279	CUST_39541_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
MLOC_71313.3	1836	2e-71	1362 - 1640	84	235 / 279	CUST_39541_PI390587928	ABC07811 ABC09965 ABC43005 ABC47240
AK251275.1	2271	0.0	671 - 1803	78	887 / 1136	CUST_42077_PI390587928	ABC09965
MLOC_13943.6	1688	0.0	441 - 1573	78	886 / 1136	CUST_42077_PI390587928	ABC09965
MLOC_13943.3	2186	0.0	939 - 2071	78	886 / 1136	CUST_42077_PI390587928	ABC09965
MLOC_13943.2	2704	0.0	1467 - 2599	78	886 / 1136	CUST_42077_PI390587928	ABC09965
MLOC_35957.1	1203	2e-161	106 - 715	84	510 / 610	CUST_39722_PI390587928	ABC07811 ABC09965 ABC43005
MLOC_28012.1	530	6e-127	97 - 505	87	355 / 409	None	ABC07811 ABC09965
MLOC_59689.1	270	2e-71	1 - 261	85	224 / 262	CUST_39722_PI390587928	ABC07811 ABC09965