- Probe CUST_27720_PI390587928
- Source Contig U35_28798
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27720_PI390587928 | Hv_44K_v2 | ATACACTGGTCTCATCGACAGGAAGGCGAATCAGGTCCAAAACATTGCACTTCCGAAAAA | 474 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.149 | 0.124 | 0.363 | 1.786 | 2.451 | 2.989 |
| Raw | 2.980 | 3.073 | 17.252 | 114.278 | 62.074 | 85.775 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251008.1 | 2093 | 2e-24 | 558 - 617 | 100 | 60 / 60 | plus | ABC07811 ABC09965 ABC43005 |
| MLOC | MLOC_50007.2 | 2163 | 2e-24 | 1524 - 1583 | 100 | 60 / 60 | minus | ABC07811 ABC09965 ABC43005 |
| MLOC | MLOC_50007.1 | 5234 | 2e-24 | 1555 - 1614 | 100 | 60 / 60 | minus | ABC07811 ABC09965 ABC43005 |
| MLOC | MLOC_50007.4 | 2365 | 2e-24 | 1497 - 1556 | 100 | 60 / 60 | minus | ABC07811 ABC09965 ABC43005 |
| MLOC | MLOC_50007.7 | 2136 | 2e-24 | 1113 - 1172 | 100 | 60 / 60 | minus | ABC07811 ABC09965 ABC43005 |
| MLOC | MLOC_50007.3 | 2347 | 2e-24 | 1512 - 1571 | 100 | 60 / 60 | minus | ABC07811 ABC09965 ABC43005 |
| JLOC1 | JLOC1_31948.2 | 2292 | 8e-25 | 663 - 722 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27865 | 615 | 3e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28798 | 615 | 3e-25 | 475 - 534 | 100 | 60 / 60 | plus |
Contig Sequence (615 bp)
>U35_28798 615 Hv_44K_v2 ACGCCCATCGAGTAACCGAGAGAGGAGGACGAGGACGACGATGGCGATGGCCATGGAAGT GCTCGCTCGATTTGCGTGTGTGTTCTTCACCACCATTCTTTTGCAGACCCTGGCATGGCC CTTCAGCAATGGAGAGGGAGGCTTCTCCTACCCCCACTCTCCAAAGGTGCCCTCCATTGT CAGCGCGAGGTACAGGACTGCCTATCACTTCCAGCCTCCCAAGAACTGGATGAACGATCC ATGTGGACCAATGTACTACAATGGCGTCTACCATGAATTCTACCAGTATAACCCCGAAGG CTCCTTTGACCCCAATGACTCCCTCATGAACATGGTTTGGGGCCATTCGGTTTCAACCGA CCTCATCAACTGGATCGGTCTTGAACCCGCAATAAAACCAGATACCCCGGGTGACATATG CGGATGTTGGACCGGCTCAGCCACAATTCTGTTTAGTGATCAACCGGTCATCGTATACAC TGGTCTCATCGACAGGAAGGCGAATCAGGTCCAAAACATTGCACTTCCGAAAAACCGTTC TGATCCGTACCTGAGGGAATGGGCCAAAGTAGGCAATAACCCAGTGATCCAACATGTCAT ACCAGGCTTGAACTC
Homology of Contig U35_28798 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g73580.1 | 513 | 4e-52 | protein|glycosyl hydrolases, putative, expressed |
| Brachypodium v1_2 | Bradi2g61830.1 | 582 | 8e-77 | |
| Arabidopsis v10 | AT3G13790.1 | 584 | 2e-51 | | Symbols: ATCWINV1, ATBFRUCT1 | Glycosyl hydrolases family 32 protein | chr3:4533084-4535831 REVERSE LENGTH=584 |