barSeed - Barley Seed Development Database

Probe CUST_17860_PI390587928

Source Contig U35_4551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17860_PI390587928	Hv_44K_v2	ATTGGTAAGTAAGACTAGTGCTTGTTGCCACCAACGATTTAAATTCGCAGAGGTTTGGAG	1258	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.035	0.021	0.339	1.803	1.855	2.492
Raw	18.879	18.353	275.447	2164.706	800.672	1158.058

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251008.1	2093	2e-24	2014 - 2073	100	60 / 60	plus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_50007.2	2163	2e-24	69 - 128	100	60 / 60	minus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_50007.1	5234	2e-24	100 - 159	100	60 / 60	minus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_50007.4	2365	2e-24	42 - 101	100	60 / 60	minus	ABC07811 ABC09965 ABC43005
MLOC	MLOC_50007.3	2347	2e-24	57 - 116	100	60 / 60	minus	ABC07811 ABC09965 ABC43005
JLOC1	JLOC1_31948.4	2320	8e-25	2076 - 2135	100	60 / 60	plus
JLOC1	JLOC1_31948.3	1755	8e-25	1511 - 1570	100	60 / 60	plus
JLOC1	JLOC1_31948.2	2292	8e-25	2048 - 2107	100	60 / 60	plus
JLOC1	JLOC1_31948.1	3809	8e-25	3565 - 3624	100	60 / 60	plus
Harvest21	ABC09965	1363	3e-25	1259 - 1318	100	60 / 60	plus	ABC09965
Harvest35	U35_4551	1363	3e-25	1259 - 1318	100	60 / 60	plus

Contig Sequence (1363 bp)

>U35_4551 1363 Hv_44K_v2
GGCAGTTGGTGCTGAGGTGAACGGCATCGGTACTGCACTTTTGTACAAGAGTGAAGACTT
TATGAATTGGACTAGAATTGAACGCCCGCTGTATTCAAACAATGCCCTCAATATGTGGGA
GTGCCTAGATTTCTTCGCGGTATTGCCGGGAAGTAACAATGGACTAGACATGTCTTCAGA
AATTCCTAGTGGCGCCAAGCATGTCCTCAAAGTGAGCATCAATTCCTGTGACATGTACAT
AATTGGGGTGTATGATCTCAAACGTGATGCCTTTGTGCCAGACACCGTCCAAGATGACAA
TCGGCTGTGGTTGAGGATTGATTATGGTACTTTCTATGCTTCAAAATCATTCTTTGACTC
CAAAAAGGGTAGGAGAGTCATATGGGCTTGGAGTAACGAGACAGACAGTACTTCAGATGA
TATTGCAAAAGGCTGGGCAGGAATCCATTCAATCCCCAGGAAAATTTGGTTAGACAGCGA
TGGCAAGCAGTTGCTGCAATGGCCAGTTGAAGAGATTGAGTCCCTTCGAATAAATGAAAT
CAACCATCAAGGACTAGAGCTGAAGAAGGGAGATATATTTGAGATTAAGGGAATCGACAC
TTTGCAGGCTGACGTTGAGATAGAGTTTGAGCCAACGTCCATCGATGATGCCGAACCTTT
TGATCCTTCCTGGCTTTTTGACCCCCGGAAGCATTGCCGGGAGGCGGATGCATCGGTTCA
TGGTGGCATAGGGCCATTTGGACTTGTTATTCTGGCCTCCGACAACATGGAGGAGCACAC
TGCAGTGCACTTCAGGGTTTACAAATCACAGCAAAAGTACATGATCCTCATGTGCTCCGA
CCTAAGAAGGTCTTCCCTGAGACCAGGACTGTACACACCAGCCTATGGAGGCTTCTTTGA
ATTTGACCTTGAAAAGGAAAGAAAGATATCCCTCAGGACTCTGATTGATAGGTCCGCCGT
GGAGAGCTTCGGCAGCGGTGGCAGGATCTGCATCACGGCCAGAGTTTATCCGGTGGCACT
TGTCGATGACGGCGCCACCCACATGTATGCTTTCAACAATGGAAGTACCACGGTCAGAGT
GCCGCAACTAAGGGCATGGAGCATGAAAAAAGCACAAGTGAATGTGATGAAGGGTGGAAA
TGTGATCGATGCTTAGCACAAAAGAGCAATTCTAGTCAGTCGTGTGATTGAAAGACTGGC
CACGCACTTGTTCATTTCAATATTTACCATGTGTATTTGAACTTTTGAAGTAGTGGCAAT
TGGTAAGTAAGACTAGTGCTTGTTGCCACCAACGATTTAAATTCGCAGAGGTTTGGAGTA
AACAATATTAGCTTGTGCATGCCAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_4551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73580.1	513	0.0	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi2g61830.1	582	0.0
Arabidopsis v10	AT1G55120.1	594	4e-117	\| Symbols: ATFRUCT5, AtcwINV3, FRUCT5 \| beta-fructofuranosidase 5 \| chr1:20566617-20569165 FORWARD LENGTH=594