barSeed - Barley Seed Development Database

Probe ABC08594

Source Contig ABC08594

barSeed

Links

Affymetrix Source Sequence (1626 bp)

>ABC08594 1626
CCAATAATAATCCCCTCAGTCCCTCACCAACCCTCGTCTCTTCTTCTTTCCCAGCCCCGC
AATCCATCCGTCGCGCGCCCAACCGTCGCCGGCGGCGCGGAGCACCGTCTTCTCCCCGGC
ATCCTCCAGGGCGGAGCGCTGGAGATCCGACTCCGCTCGACTCCTTCTCGCGTCGGACAT
AATGGCGGATATCCAGTTAGGATGTTACACTATAAAGTCCCATGGAGCCAAAGTAGCAAG
ACTCCACATGTATGACTGGATAATACTTCTCCTCCTTGCTGTCATAGATGGACTGCTGAA
TATAATCGAGCCTTTTCATCGCTTCATTGGGAAGGACATGATGACTGACTTGAGATATCC
ATTAAAGGGCAATACTGTGCCCTTTTGGGCTGTTCCGCTCATTGGAATTGTCTTACCATG
TGTCATCTTTGGTGGAATTTACTTCAAGAAGAAGAATATCTATGATTTGCACCATGGCAT
ACTGGGTATTCTTTATTCGGTGCTCATAACTGCGGTGATTACTGATGCAATTAAGGATGG
AGTTGGCCGACCACGTCCTGATTTCTTCTGGCGCTGTTTCCCAGATGGAAAGGATTTTTA
TGATAATGTCACTACTGGCGTTCTGTGCCATGGAGAGAAGAGTGTCATCAAAGAAGGTCA
CAAGAGCTTCCCAAGTGGACATTCATCATGGTCTTTTGCCGGCCTAGGCTTCCTTACGTG
GTACTTGACTGGAAAAATTGCAGTTTTTGACCGTAAAGGTCATATTGCAAAGCTCTGCAT
TATTGTTCTGCCTCTACTTACTGCTGCGCTTGTTGCCGTTTCTCGAGTGGATGACTACTG
GCATCACTGGCAAGATGTATTTGCAGGAGCTATTATAGGTCTCACAGTGGCTTCATTTTG
TTACCTGCAATTTTTCCCATATCCTTATGATACAGATGGACTGTGGCCTCACGCATATAC
CCTTCAGCTAGCCGAGGCACGCAACAGTGGCATTGCAAACTCCTTCAGCGTGCGACCACC
CACGGAGACCGAAGAAGGGGAAGGTCAGGGCGGGATCGCCCTAAGAGACACCAGTCCTAT
TCTTGACACCATGGAGTCTGGCAGGAGATACGGAAACTAGGAGGACCGGGATCAGACGAC
TACCCTAAGTACCATGATCGTCCTGACCTTCTTCGTGGGCTTGTTTTCGACAAGCATAGC
AGGGGAGAGCTGCTTTCTCACGCACAGTTTGGTGTATTATAGAGCTTGACGTTTCGTCAA
CCTCTATGGGTTTTTCAGTGTTTATTAGAGGTTTGGTTTATGTTGTGTTAACTGGATAGT
TAGCCTTGTAAGGATCAGCTGTACATTACCTAGTGGAGTGCTTCGTCGTCCATGGCGGTG
AACATGTTGCATTATTTCTTGCTCTCTCTGCCCCGAGCCCCTGAGCGATGGTTCATATTC
TTGCTCTTGAGCTTGAACTATGTAGGTTTGGTTGTCTACACACACAGTGAAGCCAGAAGC
AAAGGCTTGCTAGCTGCTAAGCTGGTCGGACCGGGACTGTAATGGATTAGCCCATTGCAA
AGCTGTAACCGGGTAATGTTCCTTGTTCTTCTTAAGAAGTAGGGCCTGGAACCATATTCA
GTTCAC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_70194.3	1780	200 - 1780	100	1581 / 1581	None	ABC08594
MLOC_70194.6	1621	241 - 1621	100	1381 / 1381	None	ABC08594
MLOC_70194.5	1521	142 - 1521	100	1380 / 1380	None	ABC08594
MLOC_70194.4	1172	4 - 1172	100	1169 / 1169	None	ABC08594
MLOC_70194.1	1183	73 - 1183	100	1111 / 1111	None	ABC08594
MLOC_70194.2	1085	110 - 1085	100	976 / 976	None	ABC08594
MLOC_53829.5	1501	216 - 1110	90	812 / 902	None	ABC08594
MLOC_53829.1	3294	190 - 1084	90	812 / 902	CUST_7307_PI390587928	ABC01986 ABC01987 ABC08594 ABC29719 ABC49953
MLOC_53829.2	1375	250 - 984	90	666 / 742	None	ABC08594
MLOC_53829.4	1234	159 - 829	89	604 / 678	None	ABC08594
MLOC_53829.3	937	236 - 748	93	478 / 513	None	ABC08594