barSeed - Barley Seed Development Database

Probe CUST_7307_PI390587928

Source Contig U35_14668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7307_PI390587928	Hv_44K_v2	GAACTGGAATAGCTTCCTTGAGCAAATGGCTTTTAACAAAAGCTGTTGGTTTACAAATCA	728	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.178	1.877	1.427	0.665	0.278	0.279
Raw	141.657	133.760	87.098	63.580	9.152	10.164

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53829.1	3294	2e-24	1656 - 1715	100	60 / 60	minus	ABC01986 ABC01987 ABC08594 ABC29719 ABC49953
JLOC1	JLOC1_34607.1	665	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC01982	811	3e-25	736 - 795	100	60 / 60	plus
Harvest35	U35_14668	804	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (804 bp)

>U35_14668 804 Hv_44K_v2
GCTCCAGCGCCGCCGCCTCCCTCCCTCCCCTCCTTCCCTCCAGAGCAGCGCAGCGCAGCG
CAGCAGCCATGGCGACGGAGCTGGCCTACGCGCCGCCGATGAAGTCGGGCAAGCTCGGCT
TCGAGGGCACGCAGGAGGTGCAGCACCGCATCCGCATCACCCTCTCCTCCAAGTCCGTCA
AGAACCTCGAGAAGGTGTGCTCGGATCTGGTGAAGGGGGCCAAGGAGAAGCAGCTCAAGG
TCAAGGGCCCCGTCAGGATGCCCACCAAGGTGCTCAACATCACCACCAGGAAATCCCCCT
GCGGAGAAGGTACCAACACCTGGGATCGGTTTGAGATGCGGGTGCACAAGAGGGTGATTG
ACCTCGTCAGCTCCCCAGACGTCGTCAAGCAGATCACCTCTATCACCATTGAGCCCGGTG
TCGAGGTTGAAGTGACCATCAGCGACCAGTAGTTATGCTACCCCCATGATATGTGTCTTT
AAATCTTTTTACAAGGGTGGTGAGACACCAACGTACCAAGATAATTTTGGAACTTCTTGT
AGTATGAGGACTGGGTTTTGTATGACTAGGTTCTTTGCTTCGTGATTCTAAGTGCCTATT
GTCTCGAGTTATCTCTGTCAAAAAATTTTCGTTCTGTGTTGAATGTTTATACTACATGGA
TCGCTATTATTTATCTATGAGATTTGGCAGCGTTTTCATAAAAAAAAAAAAAAAAATTCG
ACAATGTGGAACTGGAATAGCTTCCTTGAGCAAATGGCTTTTAACAAAAGCTGTTGGTTT
ACAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04290.1	129	1e-75	protein\|S10/S20 domain containing ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi1g51650.1	128	3e-80
Arabidopsis v10	AT5G62300.1	124	4e-63	Ribosomal protein S10p/S20e family protein \| chr5:25021388-25022235 REVERSE LENGTH=124