barSeed - Barley Seed Development Database

Probe ABC01986

Source Contig ABC01986

barSeed

Links

Affymetrix Source Sequence (698 bp)

>ABC01986 698
CGCGCCCCAAGAACCACCGGCTCCCCTCCTCCCCCCGCCCGCAGCCATGGCGACCGAGCT
GGCGTACGCGCCGCCGATGAAGTCCGGCAAGGCCGGCTTCGAGGGCCCGCAGGAGGCGCA
GCACCGCATCCGGATCACCCTCTCCTCCAAGAGCGTCAAGAACCTCGAGAAAGTGTGCTC
CGATCTGGTGAGGGGCGCCAAGGACAAGCTGCTCCGGGTCAAGGGCCCCGTCAGGATGCC
CACCAAGGTGCTCAACATCACCACCAGGAAGTCGCCGTGCGGAGAAGGTACCAACACCTG
GGATCGGTTTGAGATGCGGGTGCACAAGCGGGTGATCGACCTCGTCAGCTCCCCGGACGT
TGTCAAGCAGATCACCTCGATCACCATCGAGCCCGGTGTTGAGGTCGAGGTGACCATCAG
CGACCAGTAGAGAGCTATGCCTTTCTTACAAGTGTGGAGAGACCAGCCAACCAAGACATA
TTTTTGAACGTTTGGTAGTATATCAACTGGGTTTTGTATGGGTTGTTAGGTTCTTTGCCT
TGTGATTCAGAGTACCTCTTGTCGTCTGAGATATCATCTTGAATTTTCGTCGCCCTTTGG
TGTGTTGCGCTGGATTGGATATTTATACATGGCTCACTATTGACGTGTCTGAGATTTGGT
GTCATCGGTTGTCAAAATTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_54323.1	768	0.0	109 - 768	100	660 / 660	None	ABC01986 ABC01987 ABC49953
AK250714.1	788	3e-157	147 - 556	91	374 / 410	None	ABC01986 ABC01987 ABC49953
AK250607.1	707	1e-156	75 - 464	92	360 / 390	None	ABC01986 ABC01987 ABC29719 ABC49953
MLOC_53830.1	490	3e-102	169 - 427	93	240 / 259	None	ABC01986 ABC01987 ABC29719 ABC49953
MLOC_72248.1	416	4e-76	183 - 416	89	208 / 234	None	ABC01986 ABC01987
MLOC_1606.1	185	3e-58	5 - 178	90	158 / 175	None	ABC01986 ABC01987
MLOC_53829.1	3294	2e-55	1988 - 2132	94	136 / 145	CUST_7307_PI390587928	ABC01986 ABC01987 ABC08594 ABC29719 ABC49953