barSeed - Barley Seed Development Database

Probe ABC08262

Source Contig ABC08262

barSeed

Links

Affymetrix Source Sequence (1611 bp)

>ABC08262 1611
TAGCATAGCAGCTCCAAGTTAGGAGAGCATGCATGGCACTCCCTAAGCTGCTGCTCCTCC
TCCTCGTTGTGGGCGGTGCACTGTCACTCACCTTCTTCCCCGGTTCAGAGGCCGGCGATG
TGGGGGTGTGCTACGGGATGATGGGTGACAACCTGCCACAGCCGCCGGCGGTGGTGCAGC
TGCTGAAGCAGCACGGCATCACGATGGTGAGACTGTTCAACGCAGACGCCGGTGGGCTCC
GGGCGCTGGCCAACACCGGCATCAAGGTTGGGGTGTCGCTGCCCAACGACAACGTAGCAG
AGGCGGCGAGCAGCATGTCGTACGCGGTGCGGTGGGTGCAGAGCAACGTGCAGGCGTACC
CGGGCACGTGGATCGACAGCGTGTCCGTCGGGAACGAGGTGTTCCACCAGGCGCCATGGC
TGACCCATCAGCTCCTCCCGGCCATGAAGAACATCCAGGCGGCGCTGGCCGGCGCGGGCC
TGGGCGACGCCGTGAAGGTGGTGACGCCGATCGCCATGGACGCGCTCAAGGTGCCGTCGT
TCCCGCCGTCCGTGGGGGAGTTCCGGGACGACCTGGCGTGGTCGGTGATGAGGCCCATGG
TGGATTTCCTGGAGCAGACCGGCTCGCACCTCACCTTCAACGTCTACCCCTACTTCGCCT
ACAAGTACGATTCCCATGTCGACCCCGACTTCGCCTTCTTCCGCCCCAACAACGGGCAGC
ACGACCCGGGCACCGGCCTCACCTACTTCAACCTGTTCGACGCCATGGTCGACGCCGTGT
TCCATGCCGTGGAGAAGCTGGGCAACTCCGGCGGGCGCACTCGCGGCAGGAGGCGCGGTG
GTGTAACCTCGACGATGGGGGTACCAGAGTCGGGTGCCCCGGCCGGCAAAGGCAAAACGG
GGGTAGCATTGGCGGGCTCGGCTTCGACGGAGAACGCCCGGGCGTACAACTCCAACCTCA
TCAGCAAGGTTCTGAGAGGCGCCGGCACGCCGTACAACCCCGACGCCGACATCTCGGTCT
ACATCTTCTCCCTTTTCAACGAGAACCTCAAGCCCGGCGACGACGACGAGCGCAACTTCG
GCCTCTTCTACCCCAACGGCACGCAGGTGTACGACGTGGACTTCACGCGCCCTGGCCCCG
AGCCCGAGGGGCCTAGCTGGTGCGTGGCCAACGCGGCGGTCGGGGACGGGCGGCTCCGGG
ACGCGCTGGACTACGCGTGCGGCCACGGGGCGGACTGCAGCGGCATCCAGCCCGGCGGGT
GGTGCTTCGACCCCAACACCATGGTCGCGCACGCCTCCTACGCCTTCAACGACTACTACC
AGCGGAACGGCCGGTCCGAGGAGGCCTGTCGCTTCGGCGGCTGCGGCTCCGTCGTCCACC
AGCAGCCCAGGTTCGGCAACTGCGTGCTGCCGCAATGGCGTGACGGACTCAAGCGGTTGG
GAGGACCGCCGTACGTGCAGCTATCGCAAGACCTCTAGCTATGCGATGAACTCCGTACGT
GTACTCCGAATACCCTAGCTACGTATGTAATCAAGTAAATAAGTATTCTCTTTTTTTCCC
ACAAAAAAAAATAAAAATAAGTACCCTTTCTGTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249411.1	1763	0.0	91 - 1685	99	1593 / 1595	CUST_357_PI415269222 CUST_25197_PI390587928	ABC08262 ABC13846 ABC18116 ABC39372
MLOC_47748.2	1734	0.0	165 - 1554	100	1390 / 1390	None	ABC08262 ABC18116
MLOC_47748.4	1593	0.0	25 - 1413	100	1389 / 1389	None	ABC08262 ABC18116
MLOC_47748.1	1857	0.0	433 - 1717	100	1285 / 1285	None	ABC08262 ABC18116
AK360533	1294	1e-110	1070 - 1293	99	222 / 224	CUST_25197_PI390587928 CUST_357_PI415269222	ABC08262 ABC39372
MLOC_47748.3	545	0.0	121 - 521	100	401 / 401	None	ABC08262
MLOC_23444.1	625	1e-100	341 - 546	99	204 / 206	CUST_357_PI415269222 CUST_25197_PI390587928	ABC08262 ABC39372
MLOC_80320.4	1755	2e-87	356 - 831	80	391 / 491	CUST_26970_PI390587928 CUST_21279_PI390587928	ABC08262 ABC18116 ABC23510
MLOC_80320.3	1728	2e-87	356 - 831	80	391 / 491	CUST_26970_PI390587928	ABC08262 ABC18116 ABC23510
AK358814	3387	3e-86	2351 - 2806	80	375 / 469	CUST_26970_PI390587928 CUST_16739_PI390587928 CUST_21279_PI390587928	ABC08262 ABC08885 ABC08886 ABC18116 ABC23510
MLOC_80320.5	1824	3e-86	437 - 892	80	375 / 469	CUST_21279_PI390587928 CUST_26970_PI390587928	ABC08262 ABC18116 ABC23510
MLOC_80320.2	1975	3e-86	498 - 953	80	375 / 469	CUST_26970_PI390587928 CUST_21279_PI390587928	ABC08262 ABC18116 ABC23510
MLOC_80320.1	1917	3e-86	536 - 991	80	375 / 469	CUST_21279_PI390587928 CUST_26970_PI390587928	ABC08262 ABC18116 ABC23510
AK361492	1854	3e-61	1037 - 1434	78	321 / 409	CUST_14577_PI390587928	ABC08262 ABC18116 ABC23510