barSeed - Barley Seed Development Database

Probe CUST_357_PI415269222

Source Contig TA34089_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_357_PI415269222	Hv_44K_v2	GTACGTGTACTCCGAATACCCTAGCTACGTATGTAATCAAGTAAATAAGTATTCTCTTTT	1509	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.761	4.088	1.057	0.772	0.288	0.333
Raw	227.235	420.158	88.769	114.369	13.200	17.696

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249411.1	1763	2e-24	1585 - 1644	100	60 / 60	plus	ABC08262 ABC13846 ABC18116 ABC39372
MLOC	AK360533	1294	2e-24	1196 - 1255	100	60 / 60	plus	ABC08262 ABC39372
MLOC	MLOC_23444.1	625	2e-24	446 - 505	100	60 / 60	plus	ABC08262 ABC39372
JLOC1	JLOC1_16198.1	777	8e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC08262	1611	3e-25	1495 - 1554	100	60 / 60	plus	ABC08262
Harvest35	U35_15920	1740	3e-25	1525 - 1584	100	60 / 60	plus

Contig Sequence (1691 bp)

>TA34089_4513 1691 Hv_44K_v2
CATCTCGTTGCTGTGTAGCATAGCAGCTCCAAGTTAGGAGAGCATGCATGGCACTCCCTA
AGCTGCTGCTCCTCCTCCTCGTTGTGGGCGGTGCACTGTCACTCACCTTCTTCCCCGGTT
CAGAGGCCGGCGATGTGGGGGTGTGCTACGGGATGATGGGTGACAACCTGCCACAGCCGC
CGGCGGTGGTGCAGCTGCTGAAGCAGCACGGCATCACGATGGTGAGACTGTTCAACGCAG
ACGCCGGTGGGCTCCGGGCGCTGGCCAACACCGGCATCAAGGTTGGGGTGTCGCTGCCCA
ACGACAACGTAGCAGAGGCGGCGAGCAGCATGTCGTACGCGGTGCGGTGGGTGCAGAGCA
ACGTGCAGGCGTACCCGGGCACGTGGATCGACAGCGTGTCCGTCGGGAACGAGGTGTTCC
ACCAGGCGCCATGGCTGACCCATCAGCTCCTCCCGGCCATGAAGAACATCCAGGCGGCGC
TGGCCGGCGCGGGCCTGGGCGACGCCGTGAAGGTGGTGACGCCGATCGCCATGGACGCGC
TCAAGGTGCCGTCGTTCCCGCCGTCCGTGGGGGAGTTCCGGGACGACCTGGCGTGGTCGG
TGATGACGCCCATGGTGGATTTCCTGGAGCAGACCGGCTCGCACCTCACCTTCAACGTCT
ACCCCTACTTCGCCTACAAGTACGATTCCCATGTCGACCCCGACTTCGCCTTCTTCCGCC
CCAACAACGGGCAGCACGACCCGGGCACCGGCCTCACCTACTTCAACCTGTTCGACGCCA
TGGTCGACGCCGTGTTCCATGCCGTGGAGAAGCTGGGCAACTCCGGCGGGCGCACTCGCG
GCAGGAGGCGCGGTGGTGTAACCTCGACGATGGGGGTACCAGAGTCGGGTGCCCCGGCCG
GCAAAGGCAAAACGGGGGTAGCATTGGCGGGCTCGGCTTCGACGGAGAACGCCCGGGCGT
ACAACTCCAACCTCATCAGCAAGGTTCTGAGAGGCGCCGGCACGCCGTACAACCCCGACG
CCGACATCTCGGTCTACATCTTCTCCCTTTTCAACGAGAACCTCAAGCCCGGCGACGACG
ACGAGCGCAACTTCGGCCTCTTCTACCCCAACGGCACGCAGGTGTACGACGTGGACTTCA
CGCGCCCTGGCCCCGAGCCCGAGGGGCCTAGCTGGTGCGTGGCCAACGCGGCGGTCGGGG
ACGGGCGGCTCCGGGACGCGCTGGACTACGCGTGCGGCCACGGGGCGGACTGCAGCGGCA
TCCAGCCCGGCGGGTGGTGCTTCGACCCCAACACCATGGTCGCGCACGCCTCCTACGCCT
TCAACGACTACTACCAGCGGAACGGCCGGTCCGAGGAGGCCTGTCGCTTCGGCGGCTGCG
GCTCCGTCGTCCACCAGCAGCCCAGGTTCGGCAACTGCGTGCTGCCGCAATGGCGTGACG
GACTCAAGCGGTTGGGAGGACCGCCGTACGTGCAGCTATCGCAAGACCTCTAGCTATGCG
ATGAACTCCGTACGTGTACTCCGAATACCCTAGCTACGTATGTAATCAAGTAAATAAGTA
TTCTCTTTTTTTCCCACAAAAAGAAATAAAAATAAGTACACTTTCTGTGAGCTTGCAAGA
ATGTTTTTATATTATATAAACGGAGGTTGTACGATGGAGTAAAAATATAAATTACATTCT
CGGCGGTCACT

Homology of Contig TA34089_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35350.3	456	8e-142	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g57610.1	496	4e-139
Arabidopsis v10	AT2G05790.1	472	3e-122	O-Glycosyl hydrolases family 17 protein \| chr2:2199450-2201293 FORWARD LENGTH=472