barSeed - Barley Seed Development Database

Probe ABC08067

Source Contig ABC08067

barSeed

Links

Affymetrix Source Sequence (2243 bp)

>ABC08067 2243
GCTCTGGTACGCCGCCTACTGGGACCGTACGCATTCCGTCCGCTGGAGCCCCGTCCGCCG
CCGCCCCTTCAAGGACCGGCTCGCCGCCAGGCACGGAGAAAGGCTACCTTGCGTGGACAT
CTTCGTATGCACCGCGGACCCCTATTCGGAGCCGCCGAGCCTCGTCGTCTCCACCATCCT
ATCGCTCATGGCGTACAATTACCCACCGGAGAAGCTAAGCGTGTACCTTTCTGACGACGG
AGGCTCGATTCTCACTTTCTATGGCATGAGGGAGGCCTCCTTGATTGCGAAGCACTGGCT
GCCATTCTGCAAGAGATATAACATTGAGCCAAGGTCGCCGGCCGCTTACTTCTCGCAGTC
CGATGGGCATCAGGAACTGCGCACCCCAAAAGAATGGACATTGATCAAGGACATGTTTGA
CCAAATGACCGAGCGAATAGACACGGGTGTCATGTCGGGCAAAGCTCCCGAAGAAATCAA
AGCAAGGCATAAAGGATTTCATGAATGGAACCAGGAAATCACCTCGAAGAATCACCAGCC
AATTGTTCAGATTCTGATAGATGGCAAGGACCAAAATGCAGTTGATAATGAAGGAAATGC
GCTACCAACACTTGTTTACATGGCGCGTGAGAAGAGGCCTCAGCACCACCATAACTTCAA
AGCTGGGGCCATGAATGCTCTGATAAGGGTATCATCAGTGATAAGCAACAGCCCTATCAT
CATGAATGTGGACTGTGATATGTACTCCAACAACAAAGATGCGGTCAGAGATGCGCTGTG
CTTCTTCCTCGACGAAGAAACAGGTCACAAGATCGGATTTGTGCAGTACCCTCAGAACTA
CAATAATCTGAGCAAGAACAATATATATGGGAACTCCCTCCATGTCATCAATGAGGTTGA
GATGGGTGGTATGGACAGTTTGGGCGGCCCTCTGTATATTGGCACCGGATGTTTCCACAG
AAGGGAGATCCTTTGCGGCAGGAAGTTCACCAAAGACTACCAGGAAGACTGGAATGCAGG
AATCAAGGACAAATTACAAGAGAGCATAGATGAGACTGAAGAGAAAGCAAAGTCTTTGGC
AACCTGCACATATGAACACGGCACGCAGTGGGGAGATGAGATTGGGGTAAAATACGGTTG
CGCAGTGGAGGATGTGATCACCGGATTGGCAATACATTGCAGAGGATGGGAGTCGGTCTA
CAACAATCCTGAAAAACCAGCGTTTATGGGTGTTGGTCCAACAACGCTTGCTCAGACGCT
ACTGCAGCACAAGCGATGGAGCGAGGGTAATTTCTCGATTTTCCTTTCCAGGTACAACGT
CTTCTTGTTTGGGCATGGAAAAACCAAGCTACGGCATCAGATGGGCTACCATATCTATGG
ACTGTGGGCACCTAATTCACTCGCTACACTGTATTATGTTATCATCCCTTCACTGGCCCT
CCTCAAAGGCACCCCCCTTTTCCCAGAGATTACAAGTCCATGGATCGCACCCTTCGTATA
TGTCTTCTGTGTGAAGAACATGTACAGCCTATATGAGGCGGTCTCATGTGGAGACACACT
GAAAGGATGGTGGAATGGACAGAGGATGTGGCTGGTTAAAAGAATGACCTCGTACCTCTT
TGGAGTCCTTGACAATCTCCGGAAGTTGCTTGGACTGTCGAAGATGACATTTGTGGTTTC
ACCTAAGGTGAGCGATGAAGACGAGTCCAAGAGGTATGACCAAGAGATTATGGGATTCGG
GTCGTCGGAACCGGAATATGTGATCATCGCGACTATCGCGTTGCTCAACCTTGTTTGCCT
GCTGGGAGGGCTAAGCAAAGTCATGAAAGGTGGATGGAATGTACACCTGGATGCACTTTT
CCCCCAGCTCATTCTCTGTGGGATGGTGGTGATCACCAGTATCCCATTCTATGAAGCAAT
GTTCCTGAGGAAGGACAAAGGCAGAATACCATTCCAAGTTACACTAGCTTCTATTGGCTT
TGTGATGTTGGCCTTACTGGCTGCAATGGTTTAAGGCCCAACAAGAAGCACAGTGTGTGA
TTAGGTACTCAAGTTGGTATGGTTTATGGTTCTCTCGAAACACATGATCTGATAGTTTCA
TGTGCAACTGTATTCATATGTGGCTATCACCAGGTTGGGCAGAGGCAATTTGCGTAAGCC
CTTCGACTCAGGATTAACCATGGATCANATTACCCCTGTGAAAATTAAAATACCCAAACA
GAAAATGTCAAGAAGGCCAATGC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364579	2463	0.0	249 - 2463	99	2203 / 2216	CUST_17766_PI390587928 CUST_427_PI415269222	ABC08067 ABC37722
MLOC_65914.1	1908	0.0	1 - 1908	99	1900 / 1908	CUST_427_PI415269222	ABC08067 ABC37722
AK365747	2356	0.0	208 - 2230	84	1708 / 2035	CUST_1436_PI390587928	ABC08067
MLOC_65914.2	1277	0.0	344 - 1152	99	802 / 809	CUST_427_PI415269222	ABC08067
MLOC_65914.6	3098	2e-109	537 - 752	100	216 / 216	CUST_17766_PI390587928	ABC08067 ABC37722
MLOC_44724.1	1602	0.0	355 - 1602	84	1049 / 1250	None	ABC08067
MLOC_65914.3	2366	2e-109	2026 - 2241	100	216 / 216	CUST_427_PI415269222	ABC08067
MLOC_44724.2	918	0.0	7 - 785	85	665 / 780	None	ABC08067
MLOC_44725.1	3410	2e-54	3 - 218	85	183 / 216	CUST_1436_PI390587928	ABC08067 ABC29668
MLOC_44724.4	915	5e-170	46 - 613	86	488 / 569	None	ABC08067
MLOC_65914.4	1547	7e-64	985 - 1118	100	134 / 134	None	ABC08067
MLOC_44724.3	724	5e-150	224 - 722	86	430 / 500	None	ABC08067
MLOC_63508.1	1872	4e-146	1083 - 1670	83	492 / 595	None	ABC08067
AK374386	2081	1e-145	1714 - 2003	99	287 / 290	None	ABC08067
MLOC_63508.6	878	3e-127	328 - 875	82	454 / 555	None	ABC08067
AK377065	3964	8e-108	3131 - 3592	82	380 / 463	CUST_22352_PI390587928	ABC08067
MLOC_63508.5	1945	8e-108	1058 - 1519	82	380 / 463	None	ABC08067
MLOC_65914.5	217	2e-104	11 - 217	100	207 / 207	None	ABC08067
MLOC_63508.7	2056	4e-86	984 - 1289	86	263 / 307	None	ABC08067
MLOC_63508.4	1098	7e-79	45 - 331	85	246 / 288	None	ABC08067
MLOC_63508.2	1214	2e-63	977 - 1214	85	204 / 239	None	ABC08067