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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17766_PI390587928Hv_44K_v2TCATGTGCAACTGTATTCATATGTGGCTATCACCAGGTTGGGCAGAGGCAATTTGCGTAA2492GeneList: royalblue
MasterList: Transferase_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 5.1134.0751.2510.6680.2690.365
Raw 3535.5774283.1801139.5441013.417132.641199.558



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36457924632e-242346 - 240510060 / 60plus ABC08067 ABC37722
MLOCMLOC_65914.630982e-242150 - 220910060 / 60plus ABC08067 ABC37722
JLOC1JLOC1_43404.250088e-254140 - 419910060 / 60plus
JLOC1JLOC1_43404.129008e-252032 - 209110060 / 60plus
Harvest21ABC0806722433e-252098 - 215710060 / 60plusABC08067
Harvest35U35_291326383e-252493 - 255210060 / 60plus



Contig Sequence (2638 bp)

>U35_2913 2638 Hv_44K_v2
GGAGCACGCACGGCACCGCACGGTCCATGGACCCATCCAACCATCGAGAGAGCTGGACCG
GCCGGCTAGCCGCTAGCGTCACTGCTGATTGCAAGGCCGCCTCCTCCGCGACCATATATG
CGCGTACGCGAGCGCGCTCGGCGCCTCCAGCCTCCATACAAGCGTTTGACACAGCTCGAC
GAGAGAGCTTGAGAGAGTGAGCCAGTGGCAGAGATGGAGGAGAAGGCCACTCGTCTTCGT
CTGTTCGAGACGGAGACGCACGGGGGGCGCGCGGCGTACAGGCTCCACGCCGTCACGGTG
GCCGCGGGGGTCCTCATGCTGCTCTATTACCGGGCGACGCGCGTGCCGGCCGCCGGCGAG
GGCAGGGCGGCGTGGCTGGGCATGCTGGCGGCGGAGCTCTGGTACGCCGCCTACTGGGCC
GTCACGCAGTCCGTCCGCTGGAGCCCCGTCCGCCGCCGCCCCTTCAAGGACCGGCTCGCC
GCCAGGCACGGAGAAAGGCTACCTTGCGTGGACATCTTCGTATGCACCGCGGACCCCTAT
TCGGAGCCGCCGAGCCTCGTCGTCTCCACCATCCTATCGCTCATGGCGTACAATTACCCA
CCGGAGAAGTTAAGCGTGTACCTTTCTGACGACGGAGGCTCGATTCTCACTTTCTATGGC
ATGTGGGAGGCCTCCTTGTTTGCGAAGCACTGGCTGCCATTCTGCAAGAGATATAACATT
GAGCCAAGGTCGCCGGCCGCTTACTTCTCGCAGTCCGATGGGCATCAGGAACTGCGCACC
CCAAAAGAATGGACATTGATCAAGGACATGTTTGACCAAATGACCGAGCGAATAGACACG
GGTGTCATGTCGGGCAAAGCTCCCGAAGAAATCAAAGCAAGGCATAAAGGATTTCATGAA
TGGAACCAGGAAATCACCTCGAAGAATCACCAGCCAATTGTTCAGATTCTGATAGATGGC
AAGGACCAAAATGCAGTTGATAATGAAGGAAATGCGCTACCAACACTTGTTTACATGGCG
CGTGAGAAGAGGCCTCAGCACCACCATAACTTCAAAGCTGGGGCCATGAATGCTCTGATA
AGGGTATCATCAGTGATAAGCAACAGCCCTATCATCATGAATGTGGACTGTGATATGTAC
TCCAACAACAAAGATGCGGTCAGAGATGCGCTGTGCTTCTTCCTCGACGAAGAAACAGGT
CACAAGATCGGATTTGTGCAGTACCCTCAGAACTACAATAATCTGAGCAAGAACAATATA
TATGGGAACTCCCTCCATGTCATCAATGAGGTTGAGATGGGTGGTATGGACAGTTTGGGC
GGCCCTCTGTATATTGGCACCGGATGTTTCCACAGAAGGGAGATCCTTTGCGGCAGGAAG
TTCACCAAAGACTACCAGGAAGACTGGAATGCAGGAATCAAGGACAAATTACAAGAGAGC
ATAGATGAGACTGAAGAGAAAGCAAAGTCTTTGGCAACCTGCACATATGAACACGGCACG
CAGTGGGGAGATGAGATTGGGGTAAAATACGGTTGCGCAGTGGAGGATGTGATCACCGGA
TTGGCAATACATTGCAGAGGATGGGAGTCGGTCTACAACAATCCTGAAAAACCAGCGTTT
ATGGGTGTTGGTCCAACAACGCTTGCTCAGACGCTACTGCAGCACAAGCGATGGAGCGAG
GGTAATTTCTCGATTTTCCTTTCCAGGTACAACGTCTTCTTGTTTGGGCATGGAAAAACC
AAGCTACGGCATCAGATGGGCTACCATATCTATGGACTGTGGGCACCTAATTCACTCGCT
ACACTGTATTATGTTATCATCCCTTCACTGGCCCTCCTCAAAGGCACCCCCCTTTTCCCA
GAGATTACAAGTCCATGGATCGCACCCTTCGTATATGTCTTCTGTGTGAAGAACATGTAC
AGCCTATATGAGGCGGTCTCATGTGGAGACACACTGAAAGGATGGTGGAATGGACAGAGG
ATGTGGCTGGTTAAAAGAATGACCTCGTACCTCTTTGGAGTCCTTGACAATCTCCGGAAG
TTGCTTGGACTGTCGAAGATGACATTTGTGGTTTCACCTAAGGTGAGCGATGAAGACGAG
TCCAAGAGGTATGACCAAGAGATTATGGGATTCGGGTCGTCGGAACCGGAATATGTGATC
ATCGCGACTATCGCGTTGCTCAACCTTGTTTGCCTGCTGGGAGGGCTAAGCAAAGTCATG
AAAGGTGGATGGAATGTACACCTGGATGCACTTTTCCCCCAGCTCATTCTCTGTGGGATG
GTGGTGATCACCAGTATCCCATTCTATGAAGCAATGTTCCTGAGGAAGGACAAAGGCAGA
ATACCATTCCAAGTTACACTAGCTTCTATTGGCTTTGTGATGTTGGCCTTACTGGCTGCA
ATGGTTTAAGGCCCAACAAGAAGCACAGTGTGTGATTAGGTACTCAAGTTGGTATGGTTT
ATGGTTCTCTCGAAACACATGATCTGATAGTTTCATGTGCAACTGTATTCATATGTGGCT
ATCACCAGGTTGGGCAGAGGCAATTTGCGTAAGCCCTTCGACTCAGGATTAACCATGGAT
CANATTACCCCTGTGAAAATTAAAATACCCAAACAGAAAATGTCAAGAAGGCCAATGC



Homology of Contig U35_2913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g30130.17290.0protein|CSLE6 - cellulose synthase-like family E, expressed
Brachypodium v1_2Bradi4g33090.17260.0
Arabidopsis v10AT1G55850.17290.0| Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729