- Probe CUST_427_PI415269222
- Source Contig TA56175_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_427_PI415269222 | Hv_44K_v2 | CCCAAAAGAATGGACATTGATCAAGGACATGTTTGACCAAATGACCGAGCGAATAGACAC | 633 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.421 | 4.902 | 1.536 | 0.574 | 0.296 | 0.287 |
| Raw | 216.017 | 173.073 | 51.070 | 28.157 | 4.478 | 4.760 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364579 | 2463 | 7e-23 | 633 - 692 | 98 | 59 / 60 | plus | ABC08067 ABC37722 |
| MLOC | MLOC_65914.2 | 1277 | 7e-23 | 640 - 699 | 98 | 59 / 60 | plus | ABC08067 |
| MLOC | MLOC_65914.3 | 2366 | 7e-23 | 640 - 699 | 98 | 59 / 60 | plus | ABC08067 |
| MLOC | MLOC_65914.1 | 1908 | 7e-23 | 319 - 378 | 98 | 59 / 60 | plus | ABC08067 ABC37722 |
| JLOC1 | JLOC1_43404.2 | 5008 | 4e-23 | 2427 - 2486 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_43404.1 | 2900 | 4e-23 | 319 - 378 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC08067 | 2243 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | ABC08067 |
| Harvest35 | U35_2913 | 2638 | 3e-25 | 780 - 839 | 100 | 60 / 60 | plus |
Contig Sequence (693 bp)
>TA56175_4513 693 Hv_44K_v2 CCAGCCTCCATACAAGCGTTTGACACAGCTCGACGAGAGAGCTTGAGAGAGTGAGCCAGT GGCAGAGATGGAGGAGAAGGCCACTCGTCTTCGTCTGTTCGAGACGGAGACGCACGGGGG GCGCGCGGCGTACAGGCTCCACGCCGTCACGGTGGCCGCGGGGGTCCTCATGCTGCTCTA TTACCGGGCGACGCGCGTGCCGGCCGCCGGCGAGGGCAGGGCGGCGTGGCTGGGCATGCT GGCGGCGGAGCTCTGGTACGCCGCCTACTGGGCCGTCACGCAGTCCGTCCGCTGGAGCCC CGTCCGCCGCCGCCCCTTCAAGGACCGGCTCGCCGCCAGGCACGGAGAAAGGCTACCTTG CGTGGACATCTTCGTATGCACCGCGGACCCCTATTCGGAGCCGCCGAGCCTCGTCGTCTC CACCATCCTATCGCTCATGGCGTACAATTACCCACCGGAGAAGCTAAGCGTGTACCTTTC TGACGACGGAGGCTCGATTCTCACTTTCTATGGCATGAGGGAGGCCTCCTTGATTGCGAA GCACTGGCTGCCATTCTGCAAGAGATATAACATTGAGCCAAGGTCGCCGGCCGCTTACTT CTCGCAGTCCGATGGGCATCAGGAACTGCGCACCCCAAAAGAATGGACATTGATCAAGGA CATGTTTGACCAAATGACCGAGCGAATAGACAC
Homology of Contig TA56175_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g30130.2 | 628 | 2e-97 | protein|CSLE6 - cellulose synthase-like family E, expressed |
| Brachypodium v1_2 | Bradi4g33090.1 | 726 | 1e-105 | |
| Arabidopsis v10 | None |