barSeed - Barley Seed Development Database

Probe ABC07773

Source Contig ABC07773

barSeed

Links

Affymetrix Source Sequence (1954 bp)

>ABC07773 1954
CTCCGCTCCCCGCGATGTTGCCCGAGATCCGCGAAGAGGGCGGCGTGGGCACGAGCGCGA
CCAAGGCGATGTCGGCGTCGCTGAGCGGGAAGCGGGGCCGGTACGTGCGGCAGGTGACGG
GCCGGCACAACGACACCGACCTGCACGTCGCGGCGCGGGCCGGGGACGCCGCGGCGCTGC
GCCGCGCGTTGGACGAGGCGGCGGTGGTCGTGGCGGCGGGGGAGGCAGGGGAGGGGCTGG
AGGCGGTCCGCCGCGCCGTGGCCGCGGAGGCCAACGAGGCCGGGGAGACGCCGCTCCTGG
CCGCCGCGGAGAAGGGCCACCTCGAGGTGGTGGTGGAGCTGCTCCGGCACCTCGACGCAC
ATGGCGTCGCCGCGAAGAACAGGTCGGGGTACGACGCGCTGCACGTCGCGGCGAGAGAAG
GGCATCATGCTGTTGTGCAGGAAATGTTATGTCACGATAGGATGGCTGCCAAAACATTTG
GCCCTGCAAATACTACTCCGCTTATATCAGCAGCTACAAGGGGACATGCTGAAGTTGTCA
AACTGTTATTAGAACAAGATGATTTTGGATTGGGGGAAATGGCCAAAGATAATGGCAAAA
ATGCTTTACATTTTGCTGCTCGACAGGGACATATGGAAATTGTTAAAGCATTACTTGAGA
AAGATCCACAGCTAGCAAGACGAAATGACAAGAAAGGTCAAACGGCTCTGCATATGGCTG
TGAAAGGAACTAACTGTGATGTTCTTAGAGCACTTGTCGATGCTGATCCAGCAATTGTAA
TGCTGCCAGACAAAAATGGAAACACTGCCCTGCATGTAGCAACAAGGAAAAAGCGAGCAG
AGATAGTTATTGTTCTTTTGCGGCTACCAGATACCCATGTCAATGCACTGAACAGAGATC
ACAAGACTGCTTTTGATATAGCTGAAGGGTTGCCACATTGTGAGGAGTCGTCTGATATTA
AGGATATTTTATCTCAACATGGCGCTCTCAGATCTAGAGAGCTAAATCAGCCTCGAGATG
AGCTCCGGAAGACAGTGACAGAGATCAAGAAAGATGTCCACACACAGCTCGAACAGACAA
GAAAAACTAACAAAAATGTGCATGGCATTGCTAAGGAACTAAGAAAGTTGCACAGAGAAG
GCATCAATAATGCAACGAACTCTGTAACTGTTGTTGCGGTGCTTTTTGCTACTGTTGCTT
TTGCAGCTATATTCACTGTACCTGGTGGAAATGAAAACAATGGAGTTGCTATTGTTGTCC
AGACTGCCTCCTTTAGGATATTCTTCATCTTTAATGCCATAGCACTGTTTACATCATTGG
CGGTGGTCGTGGTTCAAATAACAGTTGTCAGGGGAGAAACCAAGTCTGAGCGAAAGGTTG
TTGAGGTGATCAACAAGCTTATGTGGCTTGCATCAATTTGCACAACCATTTCTTTCATCG
CCTCATGCTATATTGTGCTAGGCCGCCATTTCCAATGGGCAGCAATACTGGTTAGTTTGA
TAGGTGGTGTTACAATGACTGGTGTTCTTGGTACAATGACTTACTATGTGGTGAAATCAA
AGCGCATGAGGAAGATCAGAAAAAAAGAGAAGATGTCAAGGAGAAGCGGCTCAAGCTCCT
GGATTGACAATACTGAAATCTCAGAGACTGAGCTTAATCAAGTGTATGCCTTGTAAAGAG
ACAGGGTGTTTGAACGCAGCCTCGCCTTTGCAATTGAGAATGTACATGCTTAATCAAGTG
TATGCCTTGTAACTTGTAAGACACAGGGTGTTTGAACTCCCGCTCATATCTGGAATCGAG
AATGTACATGAAAATTCCAGATACCCGCATTAACAGATAGATTACTCACATTATTCCTTG
ATTGTATTCCTTTCTGTAATGACAAACCATGCATACCTAAAAGGGAGGCCCATTGTGTAA
GGCTCATGCAGTTGAAGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK355148	1841	0.0	32 - 1841	100	1810 / 1810	None	ABC07773 ABC23394
MLOC_12525.1	1544	0.0	1 - 1544	100	1544 / 1544	None	ABC07773
AK362375	2398	0.0	33 - 938	99	906 / 908	None	ABC07773 ABC22018 ABC23394
MLOC_34334.1	494	2e-88	211 - 485	88	246 / 278	None	ABC07773
AK365135	1108	3e-86	60 - 284	92	208 / 225	CUST_16827_PI390587928	ABC07773 ABC14145 ABC29753 ABC48320
AK358756	1166	7e-83	121 - 345	92	206 / 225	None	ABC07773 ABC14145 ABC29753 ABC48320
AK363573	2542	8e-73	187 - 450	86	237 / 276	None	ABC07773 ABC10646
MLOC_33088.1	278	5e-65	1 - 215	88	192 / 218	None	ABC07773
MLOC_51354.1	371	2e-59	195 - 371	90	160 / 177	None	ABC07773
MLOC_36105.1	214	1e-56	1 - 133	97	129 / 133	None	ABC07773