barSeed - Barley Seed Development Database

Probe ABC14145

Source Contig ABC14145

barSeed

Links

Affymetrix Source Sequence (1145 bp)

>ABC14145 1145
TCCTCCTCCTTCCTCCGCAACAAGGGAGAAACAACGCCGGCGACCACAGGCAGCCATACA
AGATTGATTCGCACGCGCGCCGTGAGGAGCAGGAGCGGCCGATGATGAACGACGGCCGCG
TCCACCCGGCGGCCACCAGCTCCGACTTCTCCGGCGAGTACGCATACTCCTCCTCCGACC
CCTCCTCCAGCCCGCTCTACAGCTTCCACTTCGAGAAGCCCATCCCGCCGCCGCCGCCCC
AAAAGCCGCCGCCGCCGCAGCCCGGCACGTACGTGGTGCAGGTGCCCAAGGACAAGGTCT
TCCGCGTGCCGCCGCCGGAGAACGCGCGCCTCTTCCAGCACTACACCCGCCGCGCCAAGC
GCCGCGCCGGCTGCTCCTGCCTCCGCGCGTGCCTCTACCTCGCCGTCGCGCTCCTCTCCC
TCGCCGTCCTCCTCGCCGACGCCGTCGGGGCCGTGTACCTCGCGTTCAAGCCCAGGCAGC
CGGCGTACTCCGTCGTGTCCCTCGCCGTGTCGGGCCTCGCCGGCGTCGGCAACGCCTCGG
CCCCCGGCGCGATCTCGCCGGGGTTCGTCGCGACCGTCCGCGCCGACAACAGAGCCAACG
GCAAGGTCGGCGTGCACTACGACGGCGCCGGGAGCCGCGTCGCCGTGTTGTACGAGGGCG
TGAGCCTGGCGGACGGCGCGTGGCCGGCCTTCTACGAGGCGCCTGGGAACGTGACGGTGT
TCGTGGCGAGGGCCAAGGGCGCCGGAATACGGTTCTCGGAGCGCGAGCGCGGGCAGATGG
CCACGGCGGAGCGGCTCAAGTCGGTGCTGTTCGACGTGGACATCACGGTTCCCGTGTGGC
TGCAGCTTGGCGGGGTGAGGACGTGGGCCCTGCCGGTGACGGTGCGGTGCGCCATGGCGG
TGGACAGGCTCGCCGCCAGCACCAAGGTGGTGTCCAGGTCATGCGACGTGAAGGTGCCGT
TCCTGTTCTGGAGGAACTGACGCCGAAGCAAGAAAAAATGGTTACTTGCTGATTTAGGAG
AGCAGTTCTTGCGGGTAGCAGCAACGGATTTGTGCTGCTTCCGTGATGTTTTTTTCTCCT
CTTCAATTTGTAATGTTGGTTTGATCGAGCAATGTTAATTCTTTTGTCAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369235	1176	0.0	44 - 1171	97	1100 / 1129	CUST_16827_PI390587928	ABC14145 ABC29753 ABC48320
AK365135	1108	0.0	319 - 1100	99	779 / 782	CUST_16827_PI390587928	ABC07773 ABC14145 ABC29753 ABC48320
AK358756	1166	0.0	380 - 1162	97	762 / 783	None	ABC07773 ABC14145 ABC29753 ABC48320
MLOC_23755.1	764	0.0	262 - 764	96	482 / 504	CUST_16827_PI390587928	ABC14145 ABC29753 ABC48320
MLOC_49719.1	453	0.0	1 - 450	97	435 / 450	None	ABC14145 ABC48320
MLOC_78139.1	492	0.0	1 - 361	100	361 / 361	None	ABC14145
MLOC_24949.1	249	5e-107	15 - 246	97	225 / 232	None	ABC14145 ABC29753 ABC48320
MLOC_41956.2	640	7e-106	25 - 255	97	224 / 231	CUST_42_PI415269222	ABC14145 ABC29753 ABC48320
MLOC_57470.1	223	1e-103	1 - 223	97	217 / 223	None	ABC14145 ABC48320
MLOC_41956.1	269	3e-84	1 - 203	95	193 / 203	None	ABC14145 ABC29753 ABC48320