barSeed - Barley Seed Development Database

Probe ABC07441

Source Contig ABC07441

barSeed

Links

Affymetrix Source Sequence (2106 bp)

>ABC07441 2106
GCAAAAACCCTAATCCCTAGCCCCCCACCCCCCCAGCCGCCGCCATGTCCTCCACGCCGC
CGGCCGTCGCGTCCCCCGCCTCGGAGCACACCAAATCCAAGAAAAAGAAGAGCAAATCCA
AGGATGCCTCCTCCGACCCCGCCGCCGATACCACGTCGCTGGCGGACGCGGAGGCGAAGA
CCGATGGGTACATGATCAAGCCCCAGGCCCTGGTCCCGTCCCTCGACACCTCCACCTGGC
CGCTCCTCCTCAAGAACTACGATCGCCTCAACGTCCGCACCGGCCACTACACCCCGCTCC
CCTCCGGCCACTCGCCGCTCAAACGCCCCCTCGCCGAGTACCTCCGCTACGGCGTCATCA
ACCTCGACAAGCCATCCAACCCCTCCTCCCACGAGGTGGTGGCGTGGATCAAGCGCCTCC
TCCGCGTCGAGAAGACCGGCCACAGCGGCACGCTCGACCCCAAGGTCACCGGCAACCTCA
TCGTCTGCGTCGACCGCGCCACACGCCTCGTCAAGTCGCAGCAGGGCGCAGGTAAGGAGT
ATGTGTGCATCGCCCGCTTCCACGCCGCCGTCCCAGACACGGCCCGGGTCGCCCGCGCGC
TCGAGTCCCTTACAGGCGCCGTGTTCCAGCGCCCGCCGCTCATCTCGGCGGTCAAGCGCC
AGCTCAGGGTGCGGACCATTTATGAGAGCAAGCTGCTGGAGCATGACGCCGAGCGCCACC
TTGCCGTGTTTTGGATCTCTTGTGAGGCCGGAACCTATGTACGGACGCTCTGTGTGCACC
TTGGGCTGCTCCTGGGTGTCGGTGCGCATATGCAGGAGCTGCGCCGTGTCCGGTCAGGTA
TCCTGGGGGAGCAGGACAACATGGTCACCATGCACGATGTGATGGATGCGATGTGGGCGC
TTGACAACCACAAGGATGAGTCTTACATAAGGCGTGTGGTGATGCCGCTTGAGGTAATTC
TTACTAGCTACAAGAGGCTTGTTGTGAAGGACTCTGCTGTTAATGCTATCTGCTATGGTG
CCAAGCTTATGATTCCTGGGTTGCTCCGGTTTGAGAATGACATTGATGTTGGGGAAGAGG
TTGTTCTCATGACTACAAAGGGGGAGGCGATTGCCATCGGTATCGCTGAGATGCCCACTG
CTGTTATGGCGACTTGTGACCATGGTGCTGTGGCGAAGATCAAGAGGGTGGTGATGGACA
GGGACACATACCCAAGGAAGTGGGGACTTGGTCCGGTGGCACTCAAGAAGAAGAAGATGA
TTGCTGAGGGCCTCCTTGATAAGCATGGGAAGCCAACTGACAAGATGCCAGCTGAGTGGC
TTCGAAATGTGGTGCTTCCTACTGGTGGTGATGCGATGATTGCTAGCCTTGCAGCTGCCC
CTGAGCCTGAGAAGGTGAAGGTGGAACAACAGGATGTCGTGCCAAGTGAGGAGGTCAAGG
AGAAGAAAAAGAGGAAGAATGATGAGGATGATGTGACTGCTTCTACACCTGCAAAGAAGA
TGAAGGTGGAGGAGGTCACTGAGGGAGTGGACGGGGATAAGAGTGAGAAGAAGAAGAAAA
AAAAGAAAGACAAGGGAGAACCAGGATCAGTTGTTTCAGAGGCAGTGAAGGAGGAGAAGA
GCAGCCTGTCTGACGAGGAGAAGGGTGCCAGTGAGAAGAAAAAGAAGAAGAAGAACAAGG
AAGGCAGGGATGATGTCGCTCAAGAGAGTGCGGAAGTTGAGAAGAGCGAGAAGAAAAAGG
ACAAGAAAAAGAAGAGCAAGGAAGGCGGTGATGATGTCGCTACAGAGAATGAAGTTGAGA
AGAGTGAGAAGAAAAAGGAGAAGAAAAAGAAGAAGAAAGATGCTGAGGAGGCGGCACAAT
AGGTAGAGCTAGTAGTTCACATTGTCTGGTCATGTTATTTGGTTGCAGTTATGTGGGAGT
TTGAACTACCTGTTTTATTTGCTCTGAACCCCTTGCAACCGGCTATGGTTTGATAGGTAG
GCCTGATGTACTATCTTTAGGTTGCTGCCATTCAACTGAAATGCTATGGTAATTAGAGAG
ATTTTCCTTTAAATTTGAACAATCAGTCATGTATCGCTGTATCTGTTATCAGTTTTGCAG
TGAATT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356674	2122	0.0	21 - 2122	99	2085 / 2102	None	ABC07441 ABC15467
AK361902	2123	0.0	21 - 2118	95	2002 / 2110	CUST_4168_PI390587928	ABC07441 ABC15467
MLOC_47794.9	1221	0.0	1 - 1024	99	1022 / 1024	CUST_4169_PI390587928	ABC07441 ABC15467
MLOC_47794.11	809	0.0	1 - 780	99	778 / 780	None	ABC07441
MLOC_47794.3	726	2e-64	580 - 726	97	143 / 147	None	ABC07441
MLOC_47794.5	835	7e-138	569 - 835	100	267 / 267	None	ABC07441 ABC15467
MLOC_47794.7	775	1e-65	1 - 137	100	137 / 137	CUST_4169_PI390587928	ABC07441 ABC15467
MLOC_77535.1	794	0.0	1 - 748	89	674 / 758	CUST_4168_PI390587928	ABC07441 ABC15467
MLOC_47794.4	665	6e-94	1 - 188	100	188 / 188	None	ABC07441 ABC15467
MLOC_47794.1	438	0.0	1 - 436	98	428 / 436	None	ABC07441
MLOC_47794.6	738	0.0	370 - 733	99	360 / 364	CUST_4169_PI390587928	ABC07441 ABC15467
MLOC_47794.8	912	3e-177	1 - 373	97	364 / 376	CUST_4169_PI390587928	ABC07441 ABC15467
MLOC_49766.1	314	3e-152	1 - 314	98	307 / 314	None	ABC07441
MLOC_47794.2	545	1e-135	1 - 266	99	265 / 266	None	ABC07441
MLOC_42836.1	328	2e-78	142 - 328	95	180 / 189	None	ABC07441
MLOC_44244.1	252	1e-71	102 - 252	99	150 / 151	None	ABC07441