barSeed - Barley Seed Development Database

Probe CUST_4169_PI390587928

Source Contig U35_2413

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4169_PI390587928	Hv_44K_v2	GAACAATCAGTCATGTATCGCTGTATCTGTTATCAGTTTTGCAGTGAATTTTGCTCTCAA	1058	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.555	1.343	1.282	0.876	0.284	0.251
Raw	6841.507	9498.450	7776.037	8348.440	954.619	909.593

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47794.8	912	6e-24	666 - 724	100	59 / 59	plus	ABC07441 ABC15467
MLOC	MLOC_47794.7	775	6e-24	656 - 714	100	59 / 59	plus	ABC07441 ABC15467
MLOC	MLOC_47794.9	1221	6e-24	975 - 1033	100	59 / 59	plus	ABC07441 ABC15467
MLOC	MLOC_47794.6	738	9e-22	684 - 738	100	55 / 55	plus	ABC07441 ABC15467
JLOC1	JLOC1_30770.2	1109	3e-24	158 - 216	100	59 / 59	minus
Harvest35	U35_2413	1133	3e-25	1059 - 1118	100	60 / 60	plus

Contig Sequence (1133 bp)

>U35_2413 1133 Hv_44K_v2
GTTAATGCTATCTGCTATGGTGCCAAGCTTATGATTCCTGGGTTGCTCCGGTTTGAGAAT
GACATTGATGTTGGGGAAGAGGTTGTTCTCATGACTACAAAGGGGGAGGCGATTGCCATC
GGTATCGCTGAGATGCCCACTGCTGTTATGGCGACTTGTGACCATGGTGCTGTGGCGAAG
ATCAAGAGGGTGGTGATGGACAGGGACACATACCCAAGGAAGTGGGGACTTGGTCCGGTG
GCACTCAAGAAGAAGAAGATGATTGCTGAGGGCCTCCTTGATAAGCATGGGAAGCCAACT
GACAAGATGCCAGCTGAGTGGCTTCGAAATGTGGTGCTTCCTACTGGTGGTGATGCGATG
ATTGCTAGCCTTGCAGCTGCCCCTGAGCCTGAGAAGGTGAAGGTGGAACAACAGGATGTC
GTGCCAAGTGAGGAGGTCAAGGAGAAGAAAAAGAGGAAGAATGATGAGGATGATGTGACT
GCTTCTACACCTGCAAAGAAGATGAAGGTGGAGGAGGTCACTGAGGGAGTGGACGGGGAT
AAGAGTGAGAAGAAGAAGAAAAAAAAGAAAGACAAGGGAGAACCAGGATCAGTTGTTTCA
GAGGCAGTGAAGGAGGAGAAGAGCAGCCTGTCTGACGAGGAGAAGGGTGCCAGTGAGAAG
AAAAAAAAAAAAAAAAACAAGGAAGGCAGGGATGATGTCGCTCAAGAGAGTGCGGAAGTT
GAGAAGAGCGAGAAGAAAAAGGACAAGAAAAAGAAGAGCAAGGAAGGCGGTGATGATGTC
GCTACAGAGAATGAAGTTGAGAAGAGTGAGAAGAAAAAGGAGAAGAAAAAGAAGAAGAAA
GATGCTGAGGAGGCGGCACAATAGGTAGAGCTAGTAGTTCACATTGTCTGGTCATGTTAT
TTGGTTGCAGTTATGTGGGAGTTTGAACTACCTGTTTTATTTGCTCTGAACCCCTTGCAA
CCGGCTATGGTTTGATAGGTAGGCCTGATGTACTATCTTTAGGTTGCTGCCATTCAACTG
AAATGCTATGGTAATTAGAGAGATTTTCCTTTAAATTTGAACAATCAGTCATGTATCGCT
GTATCTGTTATCAGTTTTGCAGTGAATTTTGCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44190.1	601	1e-78	protein\|h/ACA ribonucleoprotein complex subunit 4, putative, expressed
Brachypodium v1_2	Bradi2g04950.1	592	1e-89
Arabidopsis v10	AT3G57150.1	565	3e-68	\| Symbols: NAP57, AtNAP57, CBF5, AtCBF5 \| homologue of NAP57 \| chr3:21154255-21155952 REVERSE LENGTH=565