barSeed - Barley Seed Development Database

Probe CUST_4168_PI390587928

Source Contig U35_2414

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4168_PI390587928	Hv_44K_v2	GTTACTGCCATTGAACCGAAATGCTATGGTAATTACAGAGATTTCCCATTAAATTTCTTG	2038	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.882	1.646	1.191	0.765	0.270	0.217
Raw	7973.777	11092.097	6978.530	6927.327	877.223	761.975

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361902	2123	2e-24	2010 - 2069	100	60 / 60	plus	ABC07441 ABC15467
MLOC	MLOC_77535.1	794	2e-24	640 - 699	100	60 / 60	plus	ABC07441 ABC15467
JLOC1	JLOC1_51711.1	784	8e-25	640 - 699	100	60 / 60	plus
Harvest21	ABC15467	591	3e-25	491 - 550	100	60 / 60	plus	ABC15467
Harvest35	U35_2414	2101	3e-25	2039 - 2098	100	60 / 60	plus

Contig Sequence (2101 bp)

>U35_2414 2101 Hv_44K_v2
AAAACCCCCTTCTTCCTCTCGCCGCGACGGCGCCACTCCCGTTCCCCGCAAAAACCCTAA
TCCCTAGCCCCCCACCCCCCCAGCCGCCGCCATGTCCTCCACGCCGCCGGCCGTCGCGTC
CCCCGCCTCGGAGCACACCAAATCCAAGAAAAAGAAGAGCAAATCCAAGGATGCCTCCTC
CGACCCCGCCGCCGATACCACGTCGCTGGCAGACGCGGAGGCGAAGACCGATGGGTACAT
GATCAAGCCCCAGGCCCTGGTTCCGTCCCTCGACACCTCCACCTGGCCGCTCCTTCTCAA
GAACTACGACCGCCTCAACGTCCGCACCGGCCACTACACCCCGCTCCCCTCCGGCCACTC
GCCGCTCAAGCGACCCCTCGCCGAGTACCTTCGCTATGGCGTCATCAACCTCGACAAGCC
ATCCAACCCTTCCTCCCACGAGGTGGTGGCGTGGATCAAGCGCCTCCTCCGCGTCGAGAA
GACCGGCCACAGCGGCACGCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCGTCGA
CCGCGCCACACGCCTCGTCAAGTCGCAGCAGGGCGCAGGTAAGGAGTATGTGTGCATCGC
CCGCTTCCACGCCGCCGTCCCAGACACGGCCCGGGTCGCCCGCGCGCTCGAGTCCCTTAC
AGGCGCCGTGTTCCAGCGCCCGCCGCTCATCTCGGCGGTCAAGCGCCAGCTCAGGGTGCG
GACCATTTATGAGAGCAAGCTGCTGGAGCATGACGCCGAGCGCCACCTTGCCGTGTTTTG
GATCTCTTGTGAGGCCGGAACCTATGTACGGACGCTCTGTGTGCACCTTGGGCTGCTCCT
GGGTGTCGGTGCGCATATGCAGGAGCTGCGCCGTGTCCGGTCAGGTATCCTGGGGGAGCA
GGACAACATGGTCACCATGCACGATGTGATGGATGCGATGTGGGCGCTTGACAACCACAA
GGATGAGTCTTACATAAGGCGTGTGGTGATGCCGCTTGAGGTAATTCTTACTAGCTACAA
GAGGCTTGTTGTGAAGGACTCTGCTGTTAATGCTATCTGCTATGGGGCCAAGCTTATGAT
TCCTGGGTTGCTCCGGTTTGAGAATGACATTGATGTTGGGGAAGAGGTTGTTCTCATGAC
TACAAAGGGGGAGGCCATTGCCATCGGTATCGCTGAGATGCCCACTGCTGTTATGGCGAC
TTGTGACCATGGTGCTGTGGCGAAGATCAAGAGGGTGGTGATGGACAGGGACACATACCC
AAGGAAGTGGGGACTTGGTCCGGTGGCACTCAAGAAGAAGAAGATGATTGCTGAGGGCCT
CCTTGATAAGCATGGGAAGCCAACTGACAAGACCCCAGCTGAGTGGCTTCGAAATGTGGT
GCTTCCTACTGGTGGTGATGCGATGATTGCTAGCCTTGCAGCTGCTCCTGAGCCTGAGAA
GGTAAAGGCGGAACAACAGAATGTGGTGCCAAGTGAGGAGGTCAAGGAGAAGAAAAAGAG
GAAGAGTGATGAGGATGATATTACTGCTTCTACACCTGCAAAGAAGATCAAGGCGGAGGA
GGTCACTGAGGCAGTGGAAGGGGAGAAGAGTGAGAAGAAGAAAAAAAAAAAGAAAGACAA
GGGTGAACCAGGATCAGCTGTTTCAGAGACAGTGAAAGAGGAGAAGAGCAGTCTGTCTGA
TGAGGAGAAGGGTGCTAGCGAGAAGAAAAAGAAGAAGAAGAGCAAGGAAGGTGGTGATGA
TGTGGCTCTAGAGAGTGCGGAAGTTGAGAAGAGTGAGAAGAAAAAGGACAAGAAGAAGAA
GAGCAAGGAAGGCGGTGATGATGTTGCTACAGAGAGTGAAGTAGAGAAGAGTGAGAAGAA
AAAGGAGAAGAAAAAGAAGAAGAAAGACGCAGAGGAGGCGGCACAATAGGTAGGGTTAGT
AGTTTATATCGGCTGGTCATGTTATTTGGTTGCAATTGTGGGGGAGTTTGAACTACCTGT
TTTATTTGCCCTGTACCCATTGCAACCGTCTATTGTACGCCTAATGTACTATTGTTAGGT
TACTGCCATTGAACCGAAATGCTATGGTAATTACAGAGATTTCCCATTAAATTTCTTGGA
C

Homology of Contig U35_2414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g44190.1	601	protein\|h/ACA ribonucleoprotein complex subunit 4, putative, expressed
Brachypodium v1_2	Bradi2g04950.1	592
Arabidopsis v10	AT3G57150.1	565	\| Symbols: NAP57, AtNAP57, CBF5, AtCBF5 \| homologue of NAP57 \| chr3:21154255-21155952 REVERSE LENGTH=565