barSeed - Barley Seed Development Database

Probe ABC07416

Source Contig ABC07416

barSeed

Links

Affymetrix Source Sequence (1546 bp)

>ABC07416 1546
AGACACAACTCAGATCTCAGAGATAAATTATACAGCGAATCATGAAGTTACAGGTAGAGC
TTCAAAGATGATCACGAAACGTTCATGTTACACACCAAATATGTCATAATGCGTAGGCCA
TAATTCACAAGCACCATAATAATTCATGTCTCTCAAGCAAATATATACATATACTGCGAG
CTCCACACACCATCACACCGCATTTCTCAGTCTTCCTCCTCACATCGCCGTAGCAGCTAG
CTAGTTAGCCGGGAGAGAGGGGCCGGCGCCGCCGAGCGAGAGAGCCGGAGGGGGCGGGGT
GGAGGCAGGGCGGAGATGGGGCGCGGGCCGGTGCAGCTGCGGCGGATCGAGAACAAGATA
AACCGGCAGGTGACCTTCTCCAAGCGGCGCAGCGGGCTGCTTAAGAAGGCGCACGAGATC
TCCGTGCTCTGCGACGCCGAGGTCGCGCTCATCGTCTTCTCCACCAAGGGCAAGCTATAC
GAGTACTCCAGCCAGGACAGTAGCATGGATGTGATTCTTGAACGTTACCAACGTTACTCA
TTTGAAGAAAGAGCTGTACTGGATCCAAGTACTGGAGACCAGGCAAATTGGGGAGACGAA
TATGGAAGTTTGAAGATAAAACTCGATGCACTCCAGAAGAGTCAAAGGCAACTCTTAGGT
GAACAATTGGACCCACTCACCACAAAAGAACTTCAACAGTTGGAACAACAGCTTGATAGT
TCTTTGAAGCACATAAGGTCAAGAAAGAATCAACTTCTCTTTGAGTCAATATCTGAGCTT
CAAAAGAAGGAGAAATCATTAAAAGATCAGAATGGCGTCCTGCAGAAGCACCTCGTAGAG
ACAGAAAAGGAGAAAAATAACGTTTTGTCAAATATTCATCACCGGGAGCAGTTGAATGAA
GCAACAAATATTCATCACCAGGAGCAGCTGAGTGGAGCAACAACAAGCTCACCGTCACCT
ACACCACCGACGGCCCAAGATTCCATGGCACCTCCAAATATTGGGCCATATCAATCTAGA
GGAGGAGGGGATCCAGAACCTCAGCCGTCACCAGCACAAGCAAACAACAGCAATCTGCCA
CCGTGGATGCTCCGCACCATCGGCAACAGATGAAGGCTGGCGACAGCCTCATACGACTCC
ACCTGAAGGCGACAATGGCGCCTGACACGCGCCCACTATGGAAGCTAGCTGCCGGTGTGC
AGTCCATCTCCGGCAATGGCTTCCGGTGTAGCCACCAATAAGACCATGTGTCTTTGCTAC
AGGGTGAATGGGGTCTTCCTGTCTTGAGCTTTTCCTGCACTATAGGGAGCAGTGTCTTGT
TTCCACGTTTCAGTTCCCTTTTTTTTTCGCTGATCGATGAGCACGATCTTGTGGTTGGAC
TTTCGTGTGTAAGCTTTAATGGATTTGCGGTATGGTTTTACACGTTGACACGGTTTTTGT
ATTCCATCCGTTGTAAAAATGCAAAAGGGCGCTGCCTTCTCTTTATATTGTTATTAAAAG
AGTAGGGCACTGTACTTCTGCAAAGCATAGCACGACCGACAGTTCA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361063	1525	0.0	2 - 1349	99	1345 / 1350	None	ABC07416
AK361227	1432	0.0	3 - 1393	98	1368 / 1393	None	ABC07416
MLOC_38061.1	1100	0.0	35 - 1074	99	1037 / 1052	None	ABC07416
MLOC_38061.3	2115	0.0	1 - 962	99	962 / 964	None	ABC07416
MLOC_38061.6	1836	0.0	1 - 930	99	930 / 932	None	ABC07416
MLOC_38061.4	2135	0.0	1 - 982	98	962 / 984	None	ABC07416
MLOC_38061.2	880	0.0	1 - 879	99	878 / 881	None	ABC07416
MLOC_38061.5	781	0.0	1 - 683	99	683 / 685	None	ABC07416
MLOC_70413.1	1279	2e-171	641 - 967	100	327 / 327	None	ABC07416
MLOC_16662.1	2617	3e-86	1132 - 1305	100	174 / 174	CUST_30920_PI390587928	ABC06434 ABC07416
MLOC_39040.1	455	1e-60	185 - 422	85	204 / 241	CUST_41105_PI390587928	ABC07416
AK360697	1193	2e-57	141 - 378	84	202 / 241	CUST_41105_PI390587928	ABC07416 ABC11229 ABC49647