barSeed - Barley Seed Development Database

Probe CUST_30920_PI390587928

Source Contig U35_2518

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30920_PI390587928	Hv_44K_v2	AATAAGTTGCAGTGTGATTTCGTGGTTTGCTCTGTATATGTATATATTTGCTTGAGAGAC	1197	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.042	1.473	1.629	1.511	0.600	0.350
Raw	1460.187	3323.652	3124.677	4507.020	640.816	404.727

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16662.1	2617	2e-24	1279 - 1338	100	60 / 60	minus	ABC06434 ABC07416
MLOC	MLOC_16662.2	1295	2e-24	33 - 92	100	60 / 60	minus	ABC06434
JLOC1	JLOC1_11495.1	1623	8e-25	290 - 349	100	60 / 60	minus
Harvest21	ABC06434	1422	3e-25	1198 - 1257	100	60 / 60	plus	ABC06434
Harvest35	U35_2518	1422	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1422 bp)

>U35_2518 1422 Hv_44K_v2
AGCGCGAAGGTCGGAGCTCCCCGCGCCATGGCTTCCCCGTCCCCGTCCCCGTCCCCTCTC
CACCCGCACCAGCTCCAGCAGCACCCGCTCCCCCCGCACCAGCACCCCCACCCGCAGTAC
CAGACCCCGCCCCCTTCGATGCCCCCGCCGCCGGGGGCGCCCCCCAAGGCCATGGATCTG
GAGGTCACCGTCGTCTCGGGCAAGCACCTGAAGAACGTCAACTGGCGCCGCGGCGATCTC
CGCGCCTACGCCGTCGCCTACCTAGATCCCTCCCGCCGCACCGCCACCCGCCCCGACGAC
GCCGGCGGCTGCAAGCCCGCGTGGAACGAGCGCATCGTCCTCCAGCTCCCGCCCCACCTC
TCGCCGCACGACCCCTCGCTCCTCCTCTCCCTCGACGTGTTCCACTCCAAGCCATCCGAC
TCGCCCAAGCCGCTCGTCGGCTCCGCCCGCTCGCCTCTCCGCGACCTCCTCTTCCCCGCT
AGCCCTAACCCTAGCTCCGACTCCCCCGCCTCACCGATCATCACCCTCCCGCTCCTGCGC
CCCTCCGGCCGCCCACAGGGCAAGCTCCGCATCCGCGTCGCCCTTCGCGAGCGCTCACCT
CCTCCTCCTGAGCCGCAGTATCCGCCTCCTTCCTCCTCCCCCTACTATTTCCCAGCCCCT
CCGCCTCCCACCTATTCGGCACCGCCACAGTACGGCTCAGACCAGTACTACCGTCCTAGT
GGGTACTACTCTGCGCCGCCGCCACCGCCTCCATCTCAGTACGAGTACACCACAGGGCCC
TCTGCACCTGTGGAGTACGGCAGGCAGTATGAGCAAAGAGGAAGGACTGAGGGTGTGACT
GGGCAGTATGATCCGAGAAGGACTGAAGGTGTGACTGGGCAGTATGAGCCAAAAGGAAGG
ACTGAGGCTGTGACTGGGCAGTATGAACAAAGAGGAAGGACTGAGGGGGCACCTCCGAGC
GAAAGGTATGGATTAGGCACTGGGCTTGCTGTGGGTGCAGTTGCTGGGGGCGTTGGGGCG
CTTGCGATTGATGAAGGTGTGAAGTATAAGGAGGAAAAGGCAGCAGAGAGGGTGGCAGAG
AAGGTGGCTCCTGCCGCAAGGGACGATTACAGCGAGTATCGTCGAGAGTACTGATGGGGC
TTCACGTGGGCGAGGATGCGCTGTGAGTTGGTTCTTCTCAATTCCTGTTAATGTGGGAAT
AAGTTGCAGTGTGATTTCGTGGTTTGCTCTGTATATGTATATATTTGCTTGAGAGACATG
AATTATTATGGTGCTTGTGAATTATGGCCTACGCATTATGACATATTTGGTGTGTAACAT
GAACGTTTCGTGATCATCTTTGAAGCTCTACCTGTAACTTCATGATTCGCTGTATAATTT
ATCTCTGAGATCTGAGTTGTGTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63470.1	328	1e-63	protein\|C2 domain containing protein, expressed
Brachypodium v1_2	Bradi2g55240.1	327	2e-69
Arabidopsis v10	None