barSeed - Barley Seed Development Database

Probe ABC07192

Source Contig ABC07192

barSeed

Links

Affymetrix Source Sequence (2165 bp)

>ABC07192 2165
CATCTGACGATTTTGCTGAGGGGAAAATCGCTACGCTGGATGAGCTATATGAAGCTGGAA
CCAGGTGCCTTCTGAAGAGTTCGTAACAGTAAGTTGACACCAAAGCTTACTCGGCAAATG
CAGGATGTTCTTGCACTCTGTAGCGGCAGTTTACCTTCTTGGTGTAATCAGATCACTAAA
GCCTGCCCCTTTCTGTTCCCCTTCGAAACAAGGAGGCAGTACTTCCACTCCACAGCTTTT
GGGCTGTCCCGAGCGTTGAATCGGCTTCAGCAGCAGCAGGGTGATAATCCCAATACTGGT
AGTGAAAGAGAGGTCCGATTTGGCAGGTTACAGCGTCAGAAAGTTCGTGTTTCCCGTAAC
CGCATTCTGGATTCTGCCGCCAAAGTAATGGAGATGTTCTCTAGTCAGAGAGCTGTTCTT
GAGGTGGAATACTTTGGTGAGGTTGGGACAGGGCTGGGTCCTACTTTGGAGTTCTATACT
CTCCTGGGCCATGAACTGCAAAGTGCCCGGCTGGGATTATGGAGATCTAGTTCGCCTTAC
GATTATTCAGAAATGGAAATCGATAAGAATGGTGTGATTCATGCGGATTCTGACGATGAT
TTGCCAGCTCCTCAAGAACTCAACTCATCCGAAGATGCCCGGAATCTGATACAAGCTCCT
CTTGGATTATTTCCTCGCCCTTGGCCTTCTAATGTTGATACCTCAGAGGGTAGCAGATTC
CTCAAAGTCGTCGAATATTTTCGCTTGGTCGGTCGAGTTGTGGCGAAAGTCTTGCAGGAT
GGACGGCTTTTAGATTTGCCTTTGTCAACAGCATTTTATAAGCTAATACTCGGGCAGGAG
CTTGATTTATTCGACATTATCTCCTTCGATGCTGAGCTTGGAAAGACACTGCAAGAATTG
CAAGTTCTTGTTGAGCGTAAGAGGTTCTTTGAGTCCAGCTGTGGCAAGGATCAGCTAAAA
GTTGCAGACTTGCGATTCCGTGGAGCTCCTATCGAGGACTTGTGTTTAGATTTTACTCTT
CCAGGTTTTCCTGATTATGTTCTCAAAGAAGGCGAGCAAAACACAATTGTTAATATCCAC
AACCTAGAGGAGTATGTTTCTTTGGTAGTCGATGCGACACTGAAGTCAGGGATTATGAAG
CAGGTTGAAGCTTTCAGATCAGGTTTTAGCCAGGTCTTCGATATCTCATCCCTCCAAATA
TTTTCACCTCAAGAGCTTGACTATCTAATATGTGGTCGTCAAGAAATATGGGAGGCCGAA
TCACTGGTGGATAACATAAAATTTGATCACGGGTTTACTGCTAAAAGTCCTGCCATTATA
AATCTACTCGAGATCATGGCGGAATTTACCCCTGATCAGCAGCATGCATTCTGCCAGTTT
GTAACTGGTGCTTCTCGGCTTCCAACTGGTGGTTTGGCTGCCCTTAGTCCCAAGCTTACC
ATAGTTCGAAAGCACCCCTCGAGTGGGGTGAGTGCATTGAATACAAGCGGGGTAACAGAC
GCTGCGGATGACGATCTGCCCAGTGTCATGACGTGTGCCAATTATCTCAAACTACCCCCG
TATTCCACAAAAGAAGTCATGCGCAAGAAGCTGCTCTACGCCATCCTAGAAGGCCGTGGA
TCTTTTGATCTATCCTGAGCTGATAAACTAACGATACAGGGCTCACCATTGGATGCCCGT
CAATTTTATCCCGAAATAGTTTTCTTCTTCGTTGCCTGCAATAACATAGGTTGAGGTTAC
CAGCCGCTCCGCATAAAGCTTGAAAGATCAGTCGAACCTGCTGAAGCGGCGAGCCTCGCG
AGCACCACCGACAAGTATCAGGAGCACCTTTCCTCCAATACATTGTAAATAAAAAGGAGT
AAACATATTTGTCGTAAGGATTTGTTCGCTCGTTGGCGATACCCTGTCTTATGTACCGAT
TTGAGAATGTTGCTGTGTTTGCTTCGACTTTGTGTACATGTGTAACTTGATAATAAATTC
ATGCGCTCTAGACTAAAAAAAAAAAAAAAAAAGGTTATTCTTTGCCTCGTTGCCGAGTTA
GTCAGGGCGTAGACCCTACTGCCCAAACTTGAAACTCCAGGTCAATTGAATCGGTTCGCT
GGCATGTTAATGCAAGCAACATTTCAAACATGGCAAATACATTTGGCCAAAAAAAAAAAA
AAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_74893.2	4211	0.0	3192 - 4211	99	1015 / 1020	CUST_4018_PI390587928	ABC05326 ABC07192
MLOC_74893.1	4773	0.0	3754 - 4773	99	1015 / 1020	CUST_4018_PI390587928	ABC05326 ABC07192
MLOC_32351.1	804	0.0	14 - 804	95	770 / 813	None	ABC07192
MLOC_32351.2	667	0.0	2 - 658	94	638 / 679	None	ABC07192
MLOC_9931.1	5648	6e-159	4293 - 5274	77	766 / 992	CUST_29328_PI390587928 CUST_17597_PI390587928 CUST_1712_PI390587928	ABC05326 ABC07192
AK369309	5953	3e-157	4703 - 5684	77	765 / 992	CUST_29328_PI390587928 CUST_17597_PI390587928 CUST_1712_PI390587928	ABC05326 ABC07192
MLOC_52766.1	264	5e-125	1 - 262	98	256 / 262	None	ABC07192
MLOC_77193.1	220	8e-98	1 - 216	97	209 / 216	None	ABC07192
MLOC_77194.1	200	4e-91	1 - 198	97	193 / 198	None	ABC07192
MLOC_9931.2	5444	8e-73	4292 - 4821	76	412 / 539	CUST_17597_PI390587928 CUST_1712_PI390587928	ABC05326 ABC07192