barSeed - Barley Seed Development Database

Probe CUST_4018_PI390587928

Source Contig U35_25364

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4018_PI390587928	Hv_44K_v2	ATTTGTGTTCAAGATGGGGTGCATGATGTGAAATTGGGCGACGCTGATGACTCCAATGTT	941	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.216	0.853	1.458	1.072	0.729	0.964
Raw	63.789	65.490	106.295	110.678	29.060	43.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74893.2	4211	2e-24	2486 - 2545	100	60 / 60	plus	ABC05326 ABC07192
MLOC	MLOC_74893.1	4773	2e-24	3048 - 3107	100	60 / 60	plus	ABC05326 ABC07192
JLOC1	JLOC1_49924.1	4765	8e-25	3039 - 3098	100	60 / 60	plus
Harvest21	ABC23741	1017	3e-25	942 - 1001	100	60 / 60	plus
Harvest35	U35_25364	1017	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_25364 1017 Hv_44K_v2
GCCTGATAGTAAATGAAATGCTTGCTGAGCTAAGCAAAGCTAATGGTGTTTCCACATTTG
AATTCATCAGGAGTGGAGTTATCACATCATTTCTTGACTATTTGTCATGTGGGACATTTG
GTAAGGAAAAGGTATCCGAAGCAAACCTGCCGAAGCTTCGCCAGCAGGCGCTTAGGCGAT
ACAAGTCCTTCATATCTGTTGCCCTTTCTGTTGACCATGAAAGGGATGAAACTCCAATGA
CTCTCTTGGTCCAAAAACTGCAAAGTGCATTATGTTCATTGGAACGTTTCCCTGTTATGC
TCAGCCAGTCAAACAGAATTGGTACTGGAGGCTCCCGTCTGACCTCAGGTCTTGGTGCTC
TAGCTCAACCCTTCAAGTTGCGTCTGTGTCGAGCTCAAGGCGAAAAATCACTTCGGGATT
ATTCATCAAATATTGTACTTATCGATCCCTTTGCGAGTCTAGCAGCTGTCGAAGATTTTC
TTTGGCCCAGAGTTCAGCGTGGTGAGGCTGCTTCCAAACCTCAAGCCGCTTCTGCAAATA
ATTCTGAATCAGGTACACCTGGTGCCGCTGTTGGTGCATCATCAACACCTGCATCAGGCG
GGCGTCCAACAACAAGATCAAAGTCATCTGCTGCAAGTGCTGGTACATCAAATAAGGAGT
CTCTAGAGGAAAGCACTTGTAGTGCAAAGGCAAAAGGCAAAGCTGTTGTAAAACCAAGCT
CAGCTGAACCGAAAGGACCGAACACAAGGAATGCTACCCGCAGAAAATCGGCCTCAGAGA
AAGATTTGGACATGAAGCAAACACATGGTGACAGTAGTTCCGAGGATGAGGAGCTGGACA
CATCTCATATTGAGCTTGATGATGCTTTAATGATTGACGATGATGACATTTCAGAGGATG
AAGATGATGATCATGAGGTTCTCCAAGAGGGATCTCTTCCTATTTGTGTTCAAGATGGGG
TGCATGATGTGAAATTGGGCGACGCTGATGACTCCAATGTTGGTTCAGCAAGTGATA

Homology of Contig U35_25364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g00350.1	1781	7e-149
Arabidopsis v10	AT4G38600.1	1888	4e-85	\| Symbols: KAK, UPL3 \| HEAT repeat ;HECT-domain (ubiquitin-transferase) \| chr4:18041503-18049292 REVERSE LENGTH=1888