barSeed - Barley Seed Development Database

Probe CUST_1712_PI390587928

Source Contig U35_26003

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1712_PI390587928	Hv_44K_v2	TAGCAAGCATTTGACTGTATATCAAGCTATGCAACAGCAAGTAGTTCATGATGAGGATGA	574	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.075	0.790	1.604	1.242	1.006	0.899
Raw	82.459	83.353	167.528	177.409	56.562	56.138

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369309	5953	2e-24	3732 - 3791	100	60 / 60	plus	ABC05326 ABC07192
MLOC	MLOC_9931.2	5444	2e-24	3321 - 3380	100	60 / 60	plus	ABC05326 ABC07192
MLOC	MLOC_9931.1	5648	2e-24	3322 - 3381	100	60 / 60	plus	ABC05326 ABC07192
JLOC1	JLOC1_6453.1	5671	8e-25	3323 - 3382	100	60 / 60	plus
Harvest21	ABC25120	637	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_26003	637	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_26003 637 Hv_44K_v2
GCAGGAATTCGGCACCGAGGAAAAGGACCCATACTAGGACTGCAGCACGCAGAAAAGTTG
CTTTAGAGAAAGACGCAGAAGTGAAGCCAGCGCACGGTCACAGTAGCTCAGAGGACGAAG
AACTGGGTGCATCTCCCTTCGAGGCTGATGATGCTTTGATGCTTGGTGATGACGATGATG
ATGTCTCAGATGATGAAGATGATGATGATCATGAGGTTCTACGTGGGTCTCTTCCTGACT
GTGTCCCAGAGAGAGTGCATGATGTAAAACTAGCAGATGCTGATGGTGGATCTAGTATTG
CCTCGATAGCAAATGATAACCAGACACAACCCTCATCTGGCTCCAGCATAAAAAATACTT
TTAGTAGCAGGGGAGCAGGTTCTGTTGAACTTAGAACTCCAAGCACACTTGGTTCTCGGG
GCGCAATGTCGTTTGCTGCAGCTGCCATGGCTGGGCTTGCTTCTGTTGGTAGTCGTGGTG
TCAGAGGTAGCCAGGATAGGCGTGGCCTTCCACTTGGAACTAGTGCACATGAGCATTCCA
ACAAATTGATATTTACAGCTGGCGGCAAGCAGCTTAGCAAGCATTTGACTGTATATCAAG
CTATGCAACAGCAAGTAGTTCATGATGAGGATGACGA

Homology of Contig U35_26003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04567.1	1797	1e-54
Arabidopsis v10	None