barSeed - Barley Seed Development Database

Probe ABC06780

Source Contig ABC06780

barSeed

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Affymetrix Source Sequence (1065 bp)

>ABC06780 1065
CAGCAATCAGGGCCTGGACAGCGGCGGCGTGCGGCCATCGCTTCCGTCCGCCGCGGCGGT
GGGAGGAGCCTCCGTCCCGGACGAGCCGCGCGACGCGCGCGTGGTGCGGGAGCTCCTCCG
GTCGATGGGGCTCGGCGAGGGCGAGTACGAGCCGCGCGTCGTGGGCCAGTTCCTGGACCT
GGCATACCGGTACGTCGGGGACGTGCTCGGCGACGCCCAGGTCTACGCCGACCACGCAGC
CAAGCCCCAGATCGACGCCGACGACGTCCGCCTCGCCATCCAGGCCAATGTCAACTTCTC
CTTCTCCCAGCCGCCGCCCCGCGAGGTTCTACTCGAATTGGCACGCAGCCGGAACAAGAT
CCCGCTGCCCAAGTCTATTGCTCCACCTGGATCAATTCCTCTGCCACCTGAGCAGGACAC
TTTGTTGAGTGAAAACTACCAGCTCCTACCCACACTGAAGCCACCAACTCAGACTGAAGA
AGCAGAAGATGACAACGAGGGCGATGACGCAATCCCTACCAATCCTAGCCCAAACTATTC
ACAGGATCAGAGGGGCAGCGGGCAGCCTCAGCCTCAAAGCCAGAGCCAGAGGGTTTCTTT
CCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGCACCCTCTGGTGACAACTGATCAGTT
GAACATGGGCTAACTGATTGTAGATTGCTGGCGGTTCCTTGTCCCGCGAGCCTGCTTGCT
GATGATTGTGTAGCTGCTGGGATCGCCCTTTCTGGCCAGCGCCCTCCTATTTCAGCATGG
AAAATGCTGATTGTTGGGGAAAGGAGGCAGGCTTGCAAGTAGTGTATGCTGTAGCTGCAC
ACCTCGGGTTAACTAGTTTCTGTCCATTATTATCAACTTGTTGATTTTGTAGATCTTTGT
CGAACTTGAACTGTCCTGTCGTTGTTTCTGAATGCTAAATCGGTGTTCCTGTTATGCTTT
TGGTGGCATGTAGCACATATTTGGTTGGTTAAAATGAGGACATAAAAATACCTGCACATC
TCATAAAAAGAAAAAAAAAAAACNCGAGAGGGGGCGCCGGTACCC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK376346	1092	0.0	20 - 1046	99	1025 / 1027	CUST_28825_PI390587928 CUST_25870_PI390587928	ABC06780 ABC06781
MLOC_17879.1	2047	0.0	1182 - 1885	100	704 / 704	CUST_28825_PI390587928	ABC06780 ABC06781
AK374714	978	0.0	9 - 973	91	880 / 967	CUST_28822_PI390587928 CUST_25870_PI390587928	ABC06780 ABC06781
MLOC_1064.1	1040	0.0	306 - 1026	88	635 / 723	CUST_28822_PI390587928	ABC06780 ABC06781
AK356340	1094	0.0	82 - 743	86	573 / 664	CUST_25870_PI390587928 CUST_15286_PI390587928	ABC06780 ABC06781 ABC34527
MLOC_78844.1	787	4e-163	174 - 500	98	322 / 327	None	ABC06780 ABC06781
MLOC_20314.1	1907	2e-105	1492 - 1778	91	261 / 287	None	ABC06780
MLOC_20314.2	1135	1e-103	741 - 1014	92	251 / 274	None	ABC06780
MLOC_50429.1	1856	1e-102	13 - 263	94	235 / 251	None	ABC06780 ABC06781