barSeed - Barley Seed Development Database

Probe CUST_28825_PI390587928

Source Contig U35_17074

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28825_PI390587928	Hv_44K_v2	GTGGCATGTAGCACATATTTGGTTGGTTAAAATGAGGACATAAAAATACCTGCACATCTC	970	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.448	0.771	1.225	1.837	1.137	1.238
Raw	83.401	231.144	312.647	712.884	163.498	190.291

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376346	1092	2e-24	982 - 1041	100	60 / 60	plus	ABC06780 ABC06781
MLOC	MLOC_17879.1	2047	2e-24	1821 - 1880	100	60 / 60	plus	ABC06780 ABC06781
JLOC1	JLOC1_12354.1	1237	8e-25	1038 - 1097	100	60 / 60	plus
Harvest21	ABC06780	1065	3e-25	963 - 1022	100	60 / 60	plus	ABC06780
Harvest35	U35_17074	1073	3e-25	971 - 1030	100	60 / 60	plus

Contig Sequence (1073 bp)

>U35_17074 1073 Hv_44K_v2
GCAAGACACAGCAATCAGGCCATGGACAGCGGCGGCGTGCGGCCATCGCTTCCGTCCGCG
GCGGCGGCGGGAGGAGCCTCCGTCCCGGACGAGCCGCGCGACGCGCGCGTGGTGCGGGAG
CTCCTCCGGTCGATGGGGCTCGGCGAGGGCGAGTACGAGCCGCGCGTCGTGGGCCAGTTC
CTGGACCTGGCATACCGGTACGTCGGGGACGTGCTCGGCGACGCCCAGGTCTACGCCGAC
CACGCAGACAAGCCCCAGATCGACGCCGACGACGTCCGCCTCGCCATCCAGGCCAATGTC
AACTTCTCCTTCTCCCAGCCGCCGCCCCGCGAGGTTCTACTCGAATTGGCACGCAGCCGG
AACAAGATCCCGCTGCCCAAGTCTATTGCTCCACCTGGATCAATTCCTCTGCCACCTGAG
CAGGACACTTTGTTGAGTGAAAACTACCAGCTCCTACCCACACTGAAGCCACCAACTCAG
ACTGAAGAAGCAGAAGATGACAACGAGGGCGATGACGCAATCCCTACCAATCCTAGCCCA
AACTATTCACAGGATCAGAGGGGCAGCGGGCAGCCTCAGCCTCAAAGCCAGAGCCAGAGG
GTTTCTTTCCAACTGAACGCGGTGGCTGCCGCGGCTGCAAAGCACCCTCTGGTGACAACT
GATCAGTTGAACATGGGCTAACTGATTGTAGATTGCTGGCGGTTCCTTGTCCCGCGAGCC
TGCTTGCTGATGATTGTGTAGCTGCTGGGATCGCCCTTTCTGGCCAGCGCCCTCCTATTT
CAGCATGGAAAATGCTGATTGTTGGGGAAAGGAGGCAGGCTTGCAAGTAGTGTATGCTGT
AGCTGCACACCTCGGGTTAACTAGTTTCTGTCCATTATTATCAACTTGTTGATTTTGTAG
ATCTTTGTCGAACTTGAACTGTCCTGTCGTTGTTTCTGAATGCTAAATCGGTGTTCCTGT
TATGCTTTTGGTGGCATGTAGCACATATTTGGTTGGTTAAAATGAGGACATAAAAATACC
TGCACATCTCATAAAAAGAAAAAAAAAAAACNCGAGAGGGGGCGCCGGTACCC

Homology of Contig U35_17074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g29470.1	225	1e-79	protein\|transcription initiation factor IID, putative, expressed
Brachypodium v1_2	Bradi4g28410.1	225	2e-89
Arabidopsis v10	AT1G54140.1	183	2e-54	\| Symbols: TAFII21, TAF9 \| TATA binding protein associated factor 21kDa subunit \| chr1:20214076-20214869 REVERSE LENGTH=183