barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_25870_PI390587928Hv_44K_v2TCTCCTTCTCCCAGCCGCCGCCCCGCGAGGTTCTACTCGAGCTGGCACGCAGCCGGAACA361GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4730.5030.9621.2431.0601.272
Raw 260.358413.973724.3631433.492435.847578.723



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35634010942e-24361 - 42010060 / 60plus ABC06780 ABC06781 ABC34527
MLOCAK37634610923e-21316 - 3759758 / 60plus ABC06780 ABC06781
MLOCAK3747149783e-21305 - 3649758 / 60plus ABC06780 ABC06781
Harvest21ABC067818546e-22237 - 2969758 / 60plusABC06781
Harvest21ABC0678010656e-22297 - 3569758 / 60plusABC06780
Harvest21ABC067795516e-22305 - 3649758 / 60plus
Harvest35U35_245724463e-25362 - 42110060 / 60plus
Harvest35U35_170759116e-22237 - 2969758 / 60plus
Harvest35U35_1707410736e-22305 - 3649758 / 60plus



Contig Sequence (446 bp)

>U35_24572 446 Hv_44K_v2
ACACGCCAGCCAGAGCCAGAGACAGAGACACGACACAGCCAGCATACCAGACCAGACCAG
ACCATGGACGGCGGCGGCGGCGGCGGCGGCGTGCGGCCAGCGCCCATCCAGCCCGCGGCG
GCCGGAGGAGGGGCGGCGGGACCGGACGAGCCCCGCGACGCGCGCGTGGTGCGGGAGCTG
CTCCGCTCCATGGGGCTCGGCGAGGGCGAGTACGAGCCGCGCGTCGTGCACCAGTTCCTC
GACCTCGCCTACCGCTACGCCGGGGACGTGCTCGGCGACGCCCAGGTCTACGCCGACCAC
GCCGGCAAGCCCCAGCTCGACGCCGACGACGTCCGCCTCGCCATCCAGGCCAAGGTCAAC
TTCTCCTTCTCCCAGCCGCCGCCCCGCGAGGTTCTACTCGAGCTGGCACGCAGCCGGAAC
ANATCCCGCTGCCCAGTCCATCGCGC



Homology of Contig U35_24572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g29470.12256e-56protein|transcription initiation factor IID, putative, expressed
Brachypodium v1_2Bradi4g28410.12252e-57
Arabidopsis v10None