barSeed - Barley Seed Development Database

Probe ABC06102

Source Contig ABC06102

barSeed

Links

Affymetrix Source Sequence (2256 bp)

>ABC06102 2256
TACACACTGCGCACGGCCGCACAGCTATCCACCCACCCCACCACCACCACCGCGATGGCT
CCGGCGATGGGGCTCAAGCGGCCGGCGGCTGCGGCAGCTGCAGCGGCGGCTACTGCCACA
CAGACCATCACGCTGCCCCCGCAGGGGGTCGCCGTGAGGGACGCGGTGCGCGGCGCCGTG
CGGGACGCCGAGGCGCCCCCGAGGGCGCCGGCGACGCCGGCCCCCGCGGCCGCCGTCGAC
GGGGTCCTGTGCTTCGAGGAGGTGGAAGGCAGGCGGTGGAGCTACGTCGTCGAGGGCGCC
GCCTCCTCCGCCGGGAAGACGGGGAGGGTCAGCGCCAGGGCCAGGGGCGGCTCCGCCACG
CCGGTGGGGGCCACCTTCAGGGCCGTGCCGCTCCAGTCCCCGCTGCCGCCCGCCGAGGAA
ATTATGTCCTTCATAAGGTCATATGTTGTGCCTGAAGGTTTTCCAGACAGCGTGACTCCT
TCATATGTTCCATACATGACATGGAGGGCACTGAAGCATTTCTTTGGCGGAGCAATGAGT
GTATTTACAACAAGAGCCTTGTTAAACTCCGTAGGAGTCTCACAAAGCAGGGCTACGTCT
GGTGCTGTGGCTATTAACTGGATACTCAAGGATGGTGCTGGGCGTGTCGGAAAAATGCTT
TTTGCGCGTCAAGGGAAGAAATTTGACTATGACCTCAAGCAGCTCCGCTTTTCTGGGGAT
CTCATGATGGAACTAGGAGCTGGGATAGAGTTAGCTACTGCAGCGTTCCCTCAACTTTTC
CTACCGTTGGCTTGCATGGCTAATGTTGTCAAGAATGTTGCTGCTGTTACATCGACCTCA
ACCCGCACACCGATTTACAAGGCATATGCAAAAGGAGAAAATATTGGAGATGTTACTGCT
AAAGGAGAAAGTGTTGGGAACATCGCTGATCTGTTGGGTACTGGTATGAGCATTCTAATG
TCCAAGAGGAATCCATCATTGGTGGCTTCATTTGCAGTCTTGTCTTGTGGATATCTGCTT
AGTTCATATCAGGAGGTGAGATCTGTTGTGTTGAACACGCTAAATACGGCAAGATTCACC
GTGGCAGTGGATTCCTTCATAAAGACCGGGCATGTTCCTTCATTGAAGGAAGGGAACTTA
GAGGAGACAATATTTAATCCACCTTGGAGGCATCAACCTGTGGCGATAGGATCAAGATTT
GGAGAGGCATTTCAGGAACCTGCTTCATTTGTTGCTACAAGGCCTTTGTTCGAGGATGAG
AGGTACATTGTTACGTACAACCCAGCAAAGGACAAGGTTTATGCTTTGCTCAAGGACCAA
GCGAAGCAAGATGACATTCTCAAAGCTGCATTCCACGCACATGTGTTGCTGCATTTTATT
AATGCATCACATGCTAATCTGAAAGCACGGAAGCGCATGAACTCTGATCAGGGGTCATAC
CAGTATGTGAACCCAAACCCATTGAACATGGACTTTCTAGCACACATTGAAGAATCTTGC
AAGATTGTTACATCGTCGTATGGAGTATTCAAGAGGAAAGCAAGAGAACAGGGATGGATA
ATGTCTGACTCGCTACTGAACCCGGGCCGTGCTCGGCTCTGCGGAGTAGCACCACAGTGA
TATAAGCAAGATATTTCTTTCGTATATTGGATCTGAGCCTATGTGAGCCAGCACGTTATT
TAGCACAGACCAATTTCATTCAGTTCGAGTACTCGGCGTGCACCAAACTGTGGTGAGACT
AGTAGGAGGGATTGTAGGCTGCAGCTTTGGTACCATCTCAACTCTATAGAGCGGTTTGCT
GGCTGGCTCATGGCGAAGGGTCTTTAACTAACTGAAAAAAACTGACTAACAAGCTCTTGT
ATATGCGTCTGGTAATGTATAATGGAGTCCGATATCCGACCTATTTGTAGCCGGTCTAGG
TCTCTATCGGCTGAGTTCTTGTACGAGTCTGACTGCAACTTTTTTTCCCCGGTAACTTTG
CGGTGCTGTGGTTTCTCTTTGTTTCCATGACTCCAGTTGTTGTAAATGCCAGTTTCACCT
AAAGGAGAGCTTTGCTTGATTTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGC
CGCGGCGCGGGCTGTGGGTGTGCGTGTAAGGCTTCTCGGGCTTCACCTCCGCACCCCAAA
ACGAAGACATGTCTGCGACTCGATGAATTTGCCGATGCGCCGCAGGATGCCTCGCTCTCG
ATGGGGGGAGGTTAATGCTGAAACCACATCATTTTC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK362944	2189	0.0	59 - 2095	99	2031 / 2043	CUST_25291_PI390587928	ABC06102
MLOC_43595.4	1765	0.0	1 - 1765	99	1761 / 1765	None	ABC06102
MLOC_43595.1	1955	0.0	1 - 469	99	466 / 469	CUST_25291_PI390587928	ABC06102
MLOC_43595.2	1662	0.0	1028 - 1662	99	634 / 635	None	ABC06102
MLOC_43595.3	881	0.0	1 - 873	99	870 / 873	None	ABC06102
MLOC_70500.2	1791	1e-65	1492 - 1628	100	137 / 137	CUST_9425_PI390587928 CUST_18741_PI390587928	ABC06102 ABC11344 ABC11345
MLOC_70500.3	1507	1e-65	1259 - 1395	100	137 / 137	CUST_9425_PI390587928 CUST_18741_PI390587928	ABC06102 ABC11344 ABC11345
MLOC_70500.1	2348	1e-65	1639 - 1775	100	137 / 137	CUST_9425_PI390587928 CUST_18741_PI390587928	ABC06102 ABC11344 ABC11345