barSeed - Barley Seed Development Database

Probe CUST_9425_PI390587928

Source Contig U35_19759

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9425_PI390587928	Hv_44K_v2	CTGATAAGAAAACCATAACTGACAATGATGAGGAGCCTAGCAAAGAGGGGGCCAAGAAAA	155	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.882	2.270	1.274	0.659	0.286	0.351
Raw	9201.823	10773.713	5479.603	4383.777	688.163	927.722

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70500.2	1791	2e-24	523 - 582	100	60 / 60	minus	ABC06102 ABC11344 ABC11345
MLOC	MLOC_70500.3	1507	2e-24	290 - 349	100	60 / 60	minus	ABC06102 ABC11344 ABC11345
MLOC	MLOC_70500.1	2348	2e-24	670 - 729	100	60 / 60	minus	ABC06102 ABC11344 ABC11345
JLOC1	JLOC1_46786.1	2202	8e-25	1217 - 1276	100	60 / 60	plus
Harvest21	ABC11344	996	3e-25	156 - 215	100	60 / 60	plus	ABC11344
Harvest35	U35_19759	803	3e-25	156 - 215	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_19759 803 Hv_44K_v2
GGCCAAGGACAAAAGGAATGCTGTAGACAGTGAGAAGGTAAACGATGAAGATAAGGAGAT
GAAGCTAGCTTCCTCAGCTGACACTGGTGCAGCCAAACAGAAGAAAAAGAAAAGCAAGAA
GCAAAGTGCTTCTGAAGGTGACACTGATGAGCAAGCTGATAAGAAAACCATAACTGACAA
TGATGAGGAGCCTAGCAAAGAGGGGGCCAAGAAAAAGAAGAACAAGAAGAAAACACAGGA
GAACAACAGAAGTGAGAACCAGGCACAGGCTGATGTTATGAATTCAGCTAGCAAGGAGCA
GACATCTCCAAAAGCACGTACTTATGGCAATGGTTTGATTGTTCAGACGGTGGCGTTGGG
TAAACCAGATGGTAAAAAAGCTACCCCTGGGAGAAAGGTTTTTGTCACGTACACTGGCAA
GTTGAAGAATGGCAAGATTTTTGACTCTAATGTTGGTCGGAAGCCTTTTCAGTTTAGGCT
AGGTGTTGGAGAGGTCATTAAAGGCTGGGACATTGGTGTCAACGGTATGCGTGTTGGGGA
CAAAAGAAAGCTTACCATTCCACCTTCTATGGGCTATGGAAACCAGAAGGCCGGAACGAT
ACCGCCGAACTCAACTCTTCTGTTTGATGTGGAGCTAATGAACGTACAGTGAAGAGATGG
TCCAAAAGGGATGAGTACAGTGAAGAGATGGTCCAAAAGGGATGAGTACAAACCGAGACG
GTTGTGCAAGTTCAAGAAAACATCATTTTCCTCCGTTCTCGCCATAGCTTCAGTCAACAT
CCTACAGTCGTCTTTATGTACCT

Homology of Contig U35_19759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36890.2	355	7e-62	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi5g10980.2	407	1e-81
Arabidopsis v10	AT4G25340.1	477	3e-52	\| Symbols: FKBP53, ATFKBP53 \| FK506 BINDING PROTEIN 53 \| chr4:12959657-12962632 REVERSE LENGTH=477