barSeed - Barley Seed Development Database

Probe ABC05490

Source Contig ABC05490

barSeed

Links

Affymetrix Source Sequence (2421 bp)

>ABC05490 2421
CGAGATCAAGCGGGCCCAGGCCCCCGCCGTGCCGGACCTCAACCAGGTCTTCGTCTGCGA
GGACGAGGACCAGGACGGGGCCGAGGCAGCCTCCGCTCGCCCGGGCCGCTCCGAGAGGAC
CCTCGAGGGCGAGGCCGCCACGGACGTCGCCCTAACCGCGGCGGCCGTCGCCGACGGCCT
CCGCGGCAGCCTGGAGAGCGTCCTTGTCCGTGGGAGCCACCCGACGCGCGGCGTCACCGA
CAGCGGCATCTCCGCGGTCGCCCGTGGGTGCCCCTCGCTCCGCTCGCTCGCCTTGTGGGA
CGTGCCGCTTGTGACGGACGCCGGGCTCGCTGAGATCGCCGCCGGCTGCCCCTCGCTCGA
GAAGCTCGACATCACCGGCTGCCCGCTGGTCACCGACAAGGGCCTCGTCGCCGTCGCTCA
GGGCTGCCCGGATTTGAAGACGCTCACCATTGAATCATGCTCTGGCGTTGCCAATGAAGG
ACTCAAGGCCGTCGGCAGGTGCTGCTCCAAGCTGCAGGCGGTGAACATCAAGAACTGTGC
GTATGTTGGTGACCAGGGAGTGTCTGGTCTCATCTGCTCCGCGACAGCCTCGCTTGCCAA
GGTCTGCCTTCAGGGTTTGAGCATCACTGATGCTTCTCTTGCCGTGATTGGGTACTACGG
AAAGGCGATCACAAACCTCACCCTCACTCGCCTGTCATCGGTCGGCGAGAGGGGTTTTTG
GGTGATGGCAAACGCCCTTGGCCTGCAGAAGCTCAGATGTATGAGCATCACCTCCTGCCC
AGGAGTCACCGAGCTGGCACTTGTTTCCATTGCCAAGTTCTGTCCGAGCTTGAAGCAGCT
TTACCTCAGGAAGTGCAGCCAAATCTCGGATGGTCTTCTCAAGGATTTCGCAGAAGCAGC
CAAGGTTCTGGAGAATTTGCAGATTGAGGAATGCAACAGGGTTACTCTCACGGGCATCCT
TTCTTTCCTCCTGAACTGCAGCCCAAAGTTCAAGGCTCTCTCTTTGGTTAAGTGTACTGG
TATCAAGGACATTTGCTCTGCACCTGCACAGCTCCCCGTTTGCAAATCACTTCGGTCCCT
TACCATCAAGCAGTGCCCCGGATTCACAGACTCGAGCTTGGCCGTGGTTGGCATGATCTG
CCCTCATCTGGAGAATCTTGACCTGAGCGGTCTTGGTGCCGTCACCGACGATGGCCTCCT
TCCATTGATCAGGAGTTCCGAAAGTGGGCTGGTTCATGTCGACTTGAATGGTTGCGAGAA
TCTCACAGATGCAGCTATTTCCGCCCTGGTGAAGGCGCACGGCACTTCTCTTGCACATCT
GAGCCTTGAGGGCTGCAGTAAGATAACTGATGCAAGTCTGTTTGCCATTTCCGAGAGTTG
CTCCGAGCTCGCCGAGCTTGATCTTTCAAACTGCATGGTCAGCGACTATGGTGTTGCGGT
GTTGGCATCCGCGGAGCGGCTCAAGCTCCGTGTCCTCTCACTGTCCGGCTGTCTCAAGGT
CACACCGAAGAGCGTTCCATTCCTGGGAAGCATGCCTGCATCGTTGGAGGGCCTCAATCT
CCAGTTCAACTTCATCGGCAACCACAACATTGCATCACTGGAGAAGCAGCTCTGGTGGTG
CGACATCCTTGCTTAAGAGGATCTCCAGATGCAAATATACGACCGTAGGTAGTACTTCTT
CAGTCAAGCTTCATAGCAGAGTCGGGTTCATCGGTTGCGCGTTTGAGTCATGGTGGGCTT
CCTTTGTCTTAGGGTCGGTTGTTTTCCGGGGGACGCTTTAGCCAAGTGCTCGTTTTTTGC
AGGCCTCCTCTCGCGAGGTTGCCTGTTCCTTGAGCCTTCGGCTGCCATTAGCGTGGCACC
CTGTCCCTCTACCCCCAACCTATGCCCTTGTGATTACAGTCCCTACACCATGCTTCTTTT
TTTCTCTCCTTATCAAGTTCTGTGTGGGAGCTCAAATATTGTCAGTTGTGTCTTCTTTTC
CAGTACAATCTTGTTCCAGAGTTGTGGGACATCAGTACTTCTGGTTTCAATTCCATAGCA
AGTTCTATTTGTCGGATTTGTCGGTGTGTGCCTGTCGTAGAAGCTTAGCTCTGGTTCTTC
GATCCGCCTCTAGGTGTCTGCTACAACTTCTCTCAGTTTGTCCTTGTTCCAGCTTCAGTC
TCTTCACGGTCTGAAGTGTGCGTGTGTGCTGTGTGCGTGTGTGCTGTGTGCGTGTGTCGT
CGTCGGTGGATGGTTGCTTTTCTGCAGCATCTGTAGGGGTTGCCTGATGTCCCTGGGGAT
CTGGCCTTGGCAAGGTGCAACATATCAAAGGGCCCTTGCCATGACAACCTTGTGTGGTTG
TTTTTTCTGTCCAGATCCCTGTTTTTGCAGGCGTGGGTCCAGTGCTGTAACCTTTGCAAT
CATTCTGGGNATAAATAAAAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_28234.1	2053	0.0	1 - 1972	99	1959 / 1987	CUST_12509_PI390587928	ABC05490 ABC05491
AK372888	4425	1e-57	252 - 442	88	181 / 206	CUST_21249_PI390587928	ABC05490 ABC11222
AK376879	3935	1e-57	401 - 591	88	181 / 206	CUST_21249_PI390587928 CUST_39736_PI390587928	ABC05490
AK362002	2706	0.0	7 - 356	100	350 / 350	CUST_21249_PI390587928	ABC05490
MLOC_28679.1	341	4e-156	1 - 341	96	330 / 344	None	ABC05490
MLOC_46585.1	547	2e-143	170 - 547	91	353 / 387	None	ABC05490
AK370466	1731	1e-126	424 - 670	100	247 / 247	CUST_29506_PI390587928	ABC05490 ABC41046
MLOC_21893.1	3411	5e-120	3046 - 3304	97	251 / 259	None	ABC05490
MLOC_64049.1	240	4e-106	1 - 240	96	230 / 240	None	ABC05490
MLOC_35306.1	196	5e-95	4 - 196	99	192 / 193	None	ABC05490
MLOC_41251.1	165	9e-73	1 - 165	97	160 / 165	None	ABC05490
MLOC_31551.1	659	3e-72	487 - 659	95	165 / 173	None	ABC05490 ABC18647
MLOC_31551.3	449	4e-71	279 - 449	95	163 / 171	None	ABC05490 ABC18647
MLOC_31551.2	441	1e-67	277 - 441	95	157 / 165	None	ABC05490 ABC18647
MLOC_64048.1	253	2e-60	93 - 253	93	151 / 162	None	ABC05490
MLOC_60710.1	172	3e-58	1 - 145	95	138 / 145	None	ABC05490
MLOC_26034.1	304	1e-57	50 - 240	88	181 / 206	None	ABC05490
MLOC_41929.1	288	2e-54	151 - 288	95	131 / 138	None	ABC05490 ABC11222