- Probe CUST_29506_PI390587928
- Source Contig U35_50147
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29506_PI390587928 | Hv_44K_v2 | AGAGCCCTGCGGATATTGCATAGCATCTTACAGAACTTGCTCACTCATGTAACCAGGTCT | 515 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.143 | 1.194 | 1.181 | 1.143 | 0.464 | 0.406 |
| Raw | 103.956 | 164.587 | 146.697 | 225.281 | 31.347 | 30.540 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358451 | 1012 | 2e-24 | 651 - 710 | 100 | 60 / 60 | plus | None |
| MLOC | AK370466 | 1731 | 2e-24 | 1000 - 1059 | 100 | 60 / 60 | plus | ABC05490 ABC41046 |
| MLOC | MLOC_47647.2 | 781 | 2e-24 | 224 - 283 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_47647.1 | 832 | 2e-24 | 321 - 380 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_41615.1 | 368 | 2e-24 | 167 - 226 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_30697.1 | 812 | 8e-25 | 453 - 512 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52181 | 575 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC41044 | 374 | 1e-23 | 296 - 355 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50147 | 575 | 3e-25 | 516 - 575 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43852 | 374 | 1e-23 | 296 - 355 | 98 | 59 / 60 | plus |
Contig Sequence (575 bp)
>U35_50147 575 Hv_44K_v2 CACGCAGCCCCGCTCCCTCCCCTTCGGTTTCTTCTTTCCTCGCGCTGCCGGTACAGACGA GGAGGAGGAGGCGGAGGAGGGGGGGAGGTCCGCCGTTCGCCGTCCGTCCAATCCCCTGCC CGCCGGAGGGATCTCCCGTCCCACGCCCGCCGGCCGACCCACGTCAATCTCAATCTGGTC TGCCGCTGCAGCTCGGAGCAAGGTGCAGGCTTTCCTAGAGGCCGCGTGCTCCGGCGACCT CGAGGCCCTCCGGAGTAGGCCCCCCGCTCCCGCCCCTTTGCTCACCTGCTTGGCTTCGTC GCTGTTGCTGCTGGTGTTGGTTGCAGAGTTCGGTTCCGCGCTCGACGAGGAGGGGAAGGG CGTGGCCGCAGTGGCCGCCGGCATGCGGGACGCCAACAAGCGCACCGCGCTGCACTTCGC CGCTCGGGAGGGGCGCACCGAGGTCAGCCAGTTCCTCGTCGAGCAGCTCCGCCTCCCCGT CGACCCCAAGGACGACGATTGCTGTTGTCGTCGGTAGAGCCCTGCGGATATTGCATAGCA TCTTACAGAACTTGCTCACTCATGTAACCAGGTCT
Homology of Contig U35_50147 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |