barSeed - Barley Seed Development Database

Probe ABC05267

Source Contig ABC05267

barSeed

Links

Affymetrix Source Sequence (1844 bp)

>ABC05267 1844
CGCCGATGAAGCAGCAAGTCTATCGTGAGGCCGAGCTGAGGATTGGACGCGGCCACCTCA
CACTCCCGTGACTCTCGCGAGCACGCCGCCGGCGCAAGAAGCACAGCCCAAGCCAAGCTC
CCGGCCGGGCGGATTCATTGGTTGCGCGATGGACCTGCGCGTCGCTGCCCCCGCCTCCGT
GGCCGCCGCCGCGCGCCGGGGCGCGCTCGGATGCGCGCGCGTCCGGCCGCTCCAAGGCCG
CCGCCAGTGCCGCCCCTCGGTGCGCGTGTCCGTCGCGACCACGGAGTCCGCCGCCGCCGC
CGCCGCCGTAGCCGCCTCGGCGGACGAGGACGCGGAGACGACGAACCCGAGGACGGTGGT
GGCGGTCATCCTCGGCGGCGGCGCCGGGACCAGGCTCTTCCCTCTCACCAAGCGCAGGGC
CAAGCCGGCGGTGCCGATAGGCGGCGCGTACAGGCTCATCGACGTGCCCATGAGCAACTG
CATCAACAGCGGGATCAACAAGGTGTACGTCCTCACCCAGTTCAACTCCGCCTCCCTCAA
CCGCCACCTCTCCAGGGCCTACAACTTCAGCAATGGCGTCGGCTTCGGAGACGGTTTCGT
CGAGGTTCTGGCAGCAACTCAGAGGCCTGGATCGGAGGGAAAGAGGTGGTTTCAGGGTAC
CGCCGACGCGGTTCGGCAATTCGCTTGGCTTTTCGATGATGCCAAATCTAAAGACATAGA
GGATGTATTGATTCTTTCGGGCGATCACCTCTACCGTATGGACTACATGGACTTTGTTCA
GAGTCATCGGCAGAGAGATGCAGGCATCAGCATCTGTTGCTTGCCTATTGACGACAGCCG
GGCGTCTGATTTTGGTCTAATGAAGATAGACGACACAGGAAGAGTTATTTCATTTAGTGA
AAAACCGAAAGGAGCTGACTTGAAAGCAATGCAAGTTGACACCACTCTCCTCGGCTTACC
GAAGGAGGAAGCAGAAAAGAAACCATACATAGCTTCAATGGGGGTATACATATTCAAGAA
AGAGATACTTCTAAATCTTTTGAGATGGCGTTTTCCCACTGCAAATGATTTTGGCTCTGA
AATAATTCCTGCTGCAGCAAGAGAGATTAATGTAAAGGCATATCTTTTCAATGATTACTG
GGAAGACATTGGAACTATTAAATCCTTCTTCGAAGCAAATCTTGCCCTTGCTGAACAGCC
TTCAAAGTTCAGCTTCTATGATGCTAGCAAACCGATGTACACATCACGGAGAAACCTACC
ACCATCTATGATCAGCGGTAGTAAGATCACTGATTCGATCATTTCCCACGGATGTTTCTT
GGATAAATGCAGGGTAGAGCACAGTGTCGTTGGAATCCGTTCTCGGATAGGCTCCAACGT
ACACCTCAAGGATACGGTAATGCTCGGTGCTGATTTCTATGAAACTGATGCGGAAAGAGG
TGACCAGCTGGCTGAAGGAAAGGTTCCAATTGGGATCGGGGAGAACACTTCGATTCAAAA
CTGCATCATTGACAAGAATGCGAGGATAGGGAAGAACGTGACCATTGCTAACACCGAGGG
TGTACAGGAATCAGACAGGACATCAGAAGGCTTCCACATCCGGTCCGGCATCACGGTTGT
GCTGAAGAACTCAGTGATCGCGGATGGATTAGTCATATGATCTGAAAGAAGTGACTCTCC
AGTCTCCAGTTAAGCAAGAGAAATAAAGAATTCGTTTGTACTCTTCCAATAAGATGCGTG
GCAACCTTGAAAATTCTCCTTGTGTATACAAGATGACTTTGGTCCTCAAACATGCAATGT
CGTGTCACCGAATTGATTTAAAAATTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359692	1744	0.0	2 - 1742	99	1738 / 1741	CUST_20173_PI390587928	ABC05266 ABC05267 ABC05268 ABC43763
MLOC_62113.1	1062	0.0	23 - 810	100	788 / 788	CUST_20173_PI390587928	ABC05267 ABC05268
AK368183	3926	0.0	279 - 1186	92	856 / 929	CUST_27261_PI390587928	ABC05266 ABC05267 ABC38521 ABC43763
MLOC_30726.6	880	0.0	1 - 784	96	754 / 785	None	ABC05266 ABC05267 ABC43763
MLOC_30726.4	885	0.0	1 - 789	95	754 / 790	None	ABC05266 ABC05267 ABC43763
MLOC_30726.3	895	0.0	1 - 799	95	756 / 800	None	ABC05266 ABC05267 ABC43763
MLOC_30726.5	900	0.0	1 - 804	94	756 / 805	None	ABC05266 ABC05267 ABC43763
MLOC_60320.1	710	0.0	237 - 710	100	474 / 474	None	ABC05266 ABC05267
MLOC_30726.8	1248	3e-131	755 - 1034	97	272 / 280	None	ABC05266 ABC05267 ABC43763
MLOC_30726.9	1155	1e-124	753 - 1037	95	272 / 285	None	ABC05266 ABC05267 ABC43763
MLOC_30726.1	1097	3e-131	772 - 1051	97	272 / 280	None	ABC05266 ABC05267 ABC43763
MLOC_30726.7	1268	1e-124	770 - 1054	95	272 / 285	None	ABC05266 ABC05267 ABC43763
MLOC_30726.2	1121	1e-124	836 - 1120	95	272 / 285	None	ABC05266 ABC05267 ABC43763
MLOC_28654.1	320	5e-144	1 - 320	96	306 / 320	None	ABC05266 ABC05267
MLOC_47125.1	249	1e-124	1 - 249	99	247 / 249	None	ABC05267
MLOC_9563.1	503	3e-51	75 - 206	95	125 / 132	None	ABC05266 ABC05267 ABC43763
MLOC_28514.2	295	2e-78	109 - 295	95	178 / 187	None	ABC05266 ABC05267 ABC43763
MLOC_9563.2	393	3e-76	192 - 387	93	183 / 196	None	ABC05266 ABC05267
MLOC_28514.1	313	1e-70	123 - 313	93	177 / 191	None	ABC05266 ABC05267 ABC43763