barSeed - Barley Seed Development Database

Probe ABC38521

Source Contig ABC38521

barSeed

Links

Affymetrix Source Sequence (516 bp)

>ABC38521 516
AATGAAGAACCATTCTGCTACATCTGGGACAGAACTGAGGGTTTGCCATCTCAATAGCCC
TTCACATATGAATTTCAATGAAGGCTTTTTTTGGGGGTGAAAATGAACCTGCTTCTGAAG
CCAAATGAAGGTCCAGCCAACTTGACATTAATTTGCATCATTGTGGACCACCAGCTCTGT
AAATGGAAAATAAGGGAGGTCCCGTACCTTATACTCCCTCCGTTCCTAAATATAAGTCTT
TAAAGAGGTTTCATGATGAACTACATACGGATGTATATAGACATATTTTAGAGTGTAGAT
TCACTTATTTTGCTCTGTATGTAGATTCCTAATGAAATATCTTAAAATACTTATATTTAG
GAACGGAGGGAGTAGATGATATGCTGGTTGATAGAAGCTGCAGAAGATGATTGTAGGTTT
TCTCTAAGAGACACAGATTGCTATAATGAACAGAGCTTCAGAGTTGAAGCCCAACTGTAG
CAAACGACAGATTGACAGTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_68565.1	2284	7e-83	1 - 167	100	167 / 167	CUST_13434_PI390587928	ABC38521
MLOC_77048.1	2249	5e-59	870 - 1033	92	151 / 164	CUST_25770_PI390587928	ABC19129 ABC38504 ABC38521
AK368183	3926	3e-52	3138 - 3304	89	149 / 167	CUST_27261_PI390587928	ABC05266 ABC05267 ABC38521 ABC43763
AK363693	1735	3e-52	1493 - 1659	89	149 / 167	CUST_1163_PI390587928	ABC16386 ABC19129 ABC38521