barSeed - Barley Seed Development Database

Probe CUST_20173_PI390587928

Source Contig U35_2079

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20173_PI390587928	Hv_44K_v2	GCATATCTTTTCAATGATTACTGGGAAGACATTGGAACTATTAAATCCTTCTTCGAAGCA	1117	GeneList: purple MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.138	0.254	1.113	2.591	1.361	1.746
Raw	3.132	13.266	56.963	218.524	39.214	54.173

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359692	1744	2e-24	1075 - 1134	100	60 / 60	plus	ABC05266 ABC05267 ABC05268 ABC43763
MLOC	MLOC_62113.1	1062	2e-24	676 - 735	100	60 / 60	minus	ABC05267 ABC05268
JLOC1	JLOC1_40627.1	1008	8e-25	217 - 276	100	60 / 60	plus
Harvest21	ABC05267	1844	3e-25	1118 - 1177	100	60 / 60	plus	ABC05267
Harvest35	U35_2079	1844	3e-25	1118 - 1177	100	60 / 60	plus

Contig Sequence (1844 bp)

>U35_2079 1844 Hv_44K_v2
CGCCGATGAAGCAGCAAGTCTATCGTGAGGCCGAGCTGAGGATTGGACGCGGCCACCTCA
CACTCCCGTGACTCTCGCGAGCACGCCGCCGGCGCAAGAAGCACAGCCCAAGCCAAGCTC
CCGGCCGGGCGGATTCATTGGTTGCGCGATGGACCTGCGCGTCGCTGCCCCCGCCTCCGT
GGCCGCCGCCGCGCGCCGGGGCGCGCTCGGATGCGCGCGCGTCCGGCCGCTCCAAGGCCG
CCGCCAGTGCCGCCCCTCGGTGCGCGTGTCCGTCGCGACCACGGAGTCCGCCGCCGCCGC
CGCCGCCGTAGCCGCCTCGGCGGACGAGGACGCGGAGACGACGAACCCGAGGACGGTGGT
GGCGGTCATCCTCGGCGGCGGCGCCGGGACCAGGCTCTTCCCTCTCACCAAGCGCAGGGC
CAAGCCGGCGGTGCCGATAGGCGGCGCGTACAGGCTCATCGACGTGCCCATGAGCAACTG
CATCAACAGCGGGATCAACAAGGTGTACGTCCTCACCCAGTTCAACTCCGCCTCCCTCAA
CCGCCACCTCTCCAGGGCCTACAACTTCAGCAATGGCGTCGGCTTCGGAGACGGTTTCGT
CGAGGTTCTAGCAGCAACTCAGAGGCCTGGATCGGAGGGAAAGAGGTGGTTTCAGGGTAC
CGCCGACGCGGTTCGGCAATTCGCTTGGCTTTTCGATGATGCCAAATCTAAAGACATAGA
GGATGTATTGATTCTTTCGGGCGATCACCTCTACCGTATGGACTACATGGACTTTGTTCA
GAGTCATCGGCAGAGAGATGCAGGCATCAGCATCTGTTGCTTGCCTATTGACGACAGCCG
GGCGTCTGATTTTGGTCTAATGAAGATAGACGACACAGGAAGAGTTATTTCATTTAGTGA
AAAACCGAAAGGAGCTGACTTGAAAGCAATGCAAGTTGACACCACTCTCCTCGGCTTACC
GAAGGAGGAAGCAGAAAAGAAACCATACATAGCTTCAATGGGGGTATACATATTCAAGAA
AGAGATACTTCTAAATCTTTTGAGATGGCGTTTTCCCACTGCAAATGATTTTGGCTCTGA
AATAATTCCTGCTGCAGCAAGAGAGATTAATGTAAAGGCATATCTTTTCAATGATTACTG
GGAAGACATTGGAACTATTAAATCCTTCTTCGAAGCAAATCTTGCCCTTGCTGAACAGCC
TTCAAAGTTCAGCTTCTATGATGCTAGCAAACCGATGTACACATCACGGAGAAACCTACC
ACCATCTATGATCAGCGGTAGTAAGATCACTGATTCGATCATTTCCCACGGATGTTTCTT
GGATAAATGCAGGGTAGAGCACAGTGTCGTTGGAATCCGTTCTCGGATAGGCTCCAACGT
ACACCTCAAGGATACGGTAATGCTCGGTGCTGATTTCTATGAAACTGATGCGGAAAGAGG
TGACCAGCTGGCTGAAGGAAAGGTTCCAATTGGGATCGGGGAGAACACTTCGATTCAAAA
CTGCATCATTGACAAGAATGCGAGGATAGGGAAGAACGTGACCATTGCTAACACCGAGGG
TGTACAGGAATCAGACAGGACATCAGAAGGCTTCCACATCCGGTCCGGCATCACGGTTGT
GCTGAAGAACTCAGTGATCGCGGATGGATTAGTCATATGATCTGAAAGAAGTGACTCTCC
AGTCTCCAGTTAAGCAAGAGAAATAAAGAATTCGTTTGTACTCTTCCAATAAGATGCGTG
GCAACCTTGAAAATTCTCCTTGTGTATACAAGATGACTTTGGTCCTCAAACATGCAATGT
CGTGTCACCGAATTGATTTAAAAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g52460.1	512	protein\|glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
Brachypodium v1_2	Bradi1g09537.2	505
Arabidopsis v10	AT5G19220.1	522	\| Symbols: ADG2, APL1 \| ADP glucose pyrophosphorylase large subunit 1 \| chr5:6463931-6466775 REVERSE LENGTH=522