barSeed - Barley Seed Development Database

Probe ABC04811

Source Contig ABC04811

barSeed

Links

Affymetrix Source Sequence (2427 bp)

>ABC04811 2427
CCGCTCTCCCCTCTCCTCTCCACGGCCTCCGCCTCCACCCTACGCCCCCAATCCGAGGCC
ACAACTTTTAAGGCGGGCAGTGCAGAAAGCGGAACGCCCAGCCATCCGAGTCCAGCGGGG
GCAGAGGAGAGGAGAGGAGAGGGGAGGAGAGCAGAGCGCGCGGGGGAGGCGGCGATGGCG
GTGGGCGCGAAGCTGCACCTCTCGTCGGCCGCCCGGCGCCCGACGCTGCCCCAGCTCCTG
GCCGTCGCGCTGCTCTGCTCGGCGTCCTACCTCGCCGGCGTCTGGCACCACGGCGGTGGC
TTCACCGCCGCCCCCTCGGCCGCCGCCGCAGGCGGCTCCCCCTCCCCCGTCTCCATCGCC
ACCACCTCCTCCGTCGCCTGCGTCTCCCCGACCCCGGCCGCACCACTCGACTTCGCGGCG
CACCACGCGGCGGACGAGGCGGAGGCGAAGGTCGCGCCGGCGCGGCGCGCGTACGGGGCG
TGCCCGGCCAAGTACTCCGAGTACACGCCGTGCGAGGACGTGGAGCGGTCGCTGCGGTTC
CCGCGGGACCGGCTCGTGTACCGGGAGCGGCACTGCCCGGCGGAGGGCGAGCGGCTGCGG
TGCCTCGTCCCGGCGCCCAAGGGGTACCGCAACCCGTTCCCGTGGCCGGCCAGCCGCGAC
GTCGCGTGGTTCGCCAACGTGCCGCACAAGGAGCTCACCGGGAGAAGGCGGTGCACAACT
GGATCCACGTCGAGGGCGACAAGTTCCGCTTCCCGGGCGGCGGCACCATGTTCCCCCACG
GCGCCGGCGCCTACATCGACGACATCGGCAACCTCATCCCCCTCCACGACGGATCCATCC
GCACCGCCCTCGACACCGGCTGCGGGGTGGCGAGCTGGGGAGCGTATCTGTTGTCACGCA
ACATCCTGGCCATGTCGTTCGCTCCGCGGGACTCGCACGAGGCGCAGGTGCAGTTCGCGC
TGGAACGTGGGGTGCCGGCGATGATCGGGGTCCTCGCCTCCAACAGGCTCACCTATCCTG
CGCGCGCCTTCGACATGGCGCACTGCTCCCGCTGCCTAATCCCCTGGCAGCTCTACGATG
GCCTGTACTTGATTGAGGTGGATCGCATTCTTCGTCCTGGGGGCTACTGGATCTTGTCCG
GACCACCGATCAACTGGAAGAAGCACTCCAAGGGGTGGCAGAGGACCAGGGAGGACCTGA
ACGCAGAGCAGCAAGCCATTGAGTCAGTCGCCAAGAGCCTCTGCTGGAAGAAGATCAAGG
AGGTTGGCGACATTGCCATCTGGCAAAAGCCTACCAATCACATCCACTGCAAGGCTCTCC
GCAAAGTCGCCAAGTCCCCGCCATTCTGCTCGAATAAAAACCCAGATGCTGCCTGGTACG
AGAAGATGGAGGCTTGTATAACTCCGCTACCGGAGGTGAGTGACATCAAGGAGGTCGCCG
GCGGTGAGCTGAAGAAGTGGCCACAGAGGCTCACCGCCGTGCCACCCAGGATTGCTAGTG
GCAGTTTTGAGGGGGTCACCGCCGAAATGTTCAACGAGGATACCAAGTTATGGAAGAAGA
GAGTGGGGCACTACAAGTCCGTGGTAAGTCAGTTTGGGCAGAAGGGCCGGTACCGCAACT
TGCTTGATATGAATGCCCGCTTTGGCGGCTTCGCTGCGGCATTGGCGGGTGACCCTATGT
GGGTGATGAACATGGTCCCAACCATTGGAAATTCAACGACTCTTGGGGTGATATACGAGC
GTGGCCTCATTGGAAACTACCAAGACTGGTGCGAGGGCATGTCCACCTATCCCCGGACCT
ACGACCTCATTCATGCTGATTCAGTTTTCAGTCTGTACAAGGACAGGTGTGAGATGGACA
CCATCCTGCTGGAGATGGACAGGATCCTGAGGCCGGAGGGCACGGTGATCATCAGGGACG
ATGTGGACCTGCTAGTGAAGATAAAGAGCGTCGCGGACGGGATGAGATGGAATAGCCAGA
TCGTGGACCACGAAGACGGTCCGCTCGTCCGGGAGAAGCTCCTCCTTGTTGTGAAGACAT
ACTGGACACTTGGGGACGAGAAACAATAGCGACGCCCCGAAATAAAGCATGAGAAACTGA
GAAAATTGACAGATACTGGGCAGATGTCACAACCGGCCTTCCTCTCACTGTGTTCGCCCT
GTGGTTTTGAAGTTTTATCTTGCTGGGTCATTCTTTTTGGTGAAAATAGTTAAACATAGT
GGAGACATGCCCAAGTATATGACAGATTTTGACATGGGAAGGACAGCCAGCCAGCCAAAT
GGGGCAGACAGAGATTTCATTATGTTTCTTGCTGTACAAAGGGTTGGTCATGTATAAGTT
CCCCTCGGCTCTTCTGTCCTCCTTACTGAATCAGTCCCAAGAATATTAAGACTACTTCGG
TGATGCTCTTCAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364198	2381	0.0	2 - 2381	99	2376 / 2380	CUST_36012_PI390587928	ABC04810 ABC04811
AK353629	2367	0.0	103 - 2365	99	2260 / 2263	CUST_36012_PI390587928	ABC04810 ABC04811
MLOC_43452.2	2006	0.0	1 - 1990	99	1984 / 1990	CUST_36360_PI390587928 CUST_36012_PI390587928	ABC04810 ABC04811
MLOC_43452.1	1536	0.0	1 - 1355	99	1351 / 1355	CUST_36012_PI390587928	ABC04811
AK366843	2191	0.0	371 - 1961	84	1342 / 1595	CUST_29690_PI390587928 CUST_14289_PI390587928	ABC04810 ABC04811
MLOC_65736.1	1745	0.0	258 - 1745	84	1250 / 1492	CUST_21222_PI390587928 CUST_29690_PI390587928	ABC04810 ABC04811
AK375789	2239	7e-64	1874 - 2076	89	180 / 203	CUST_29690_PI390587928 CUST_14289_PI390587928	ABC04810 ABC04811
MLOC_65736.3	1452	0.0	188 - 1450	83	1052 / 1267	CUST_29690_PI390587928	ABC04811
MLOC_65736.2	1645	0.0	252 - 1443	82	979 / 1197	CUST_21222_PI390587928 CUST_29690_PI390587928	ABC04810 ABC04811
MLOC_78390.1	364	0.0	1 - 364	100	364 / 364	None	ABC04811
MLOC_18802.1	555	1e-71	1 - 148	100	148 / 148	None	ABC04811