- Probe CUST_21222_PI390587928
- Source Contig U35_26825
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21222_PI390587928 | Hv_44K_v2 | CTTCACTTGATCGCCAAATTGTGCCAAGTGGTTAATAGAAGTACTGTCTGCGAGTTATTT | 386 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.597 | 2.769 | 1.515 | 0.414 | 0.041 | 0.072 |
| Raw | 321.261 | 915.948 | 417.106 | 186.117 | 5.624 | 12.317 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65736.1 | 1745 | 2e-24 | 6 - 65 | 100 | 60 / 60 | minus | ABC04810 ABC04811 |
| MLOC | MLOC_65736.2 | 1645 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC04810 ABC04811 |
| JLOC1 | JLOC1_43276.1 | 1778 | 8e-25 | 1691 - 1750 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51278 | 446 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26825 | 446 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus |
Contig Sequence (446 bp)
>U35_26825 446 Hv_44K_v2 ATGGACACCATTCTGCTGGAGATGGACAGGATCCTGAGGCCTGAGGGCACAGTGATCATC AGAGACGACGTGGACATACTGGTGAAGGTCAAGAGCGTCGCCGACGGGATGAGGTGGGAC AGCCAGATCGTCGACCACGAAGACGGCCCGCTCGTCCGGGAGAAGATCCTCCTGGTCGCC AAGACGTATTGGACTGCCAAGAACCAAGACCAATAGCACTAGTATAGTATCTATATATAC TACTTATTGCTGATAAGCACATTGCTCAGAAGATCCCAAAGTTGGATCGCCATTTGTACT AGCTCCATGAACTGCCTTTCTATGCTCTTTATTTATTTATTTACGTCTTTATATAGGAAA TTTGTAATTTGTATGCAAAGATTGCCCTTCACTTGATCGCCAAATTGTGCCAAGTGGTTA ATAGAAGTACTGTCTGCGAGTTATTT
Homology of Contig U35_26825 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |