barSeed - Barley Seed Development Database

Probe ABC04676

Source Contig ABC04676

barSeed

Links

Affymetrix Source Sequence (1749 bp)

>ABC04676 1749
CACGAGGATCGATCAAGCGAGCCCGCGCCGCCGCGGGGCTCCGGCGGATGGGCGTCGGCA
AGGGCGACGTGGTCATGAACCTGCTCCGCAACTGCCCCGAGTTCGCCTTCTCCTTCCTCG
GCGCGGCCCGCCTCGGCGCCGCCACCACCACCGCCAACCCCTTCTACACCCCGCACGAGA
TCCACCGGCAGGCGGACGCGGCCGGCGCCATGCTCATCGTCACCGAGGCCTGCGCCGTCG
ACAAGGTGCTGGAGTACGCGGCCGCCAAGGGCCTGCCCGTGGTCACCGTGGACGGGAAGC
GCGACGGGTGCGTCGAGTTCGCCGAGCTGATCGCCGGCGAGGAGCTGCCGCAGGCCGAGG
AGGCCGGGATCCACCCCGACGACGTCGTCGCGCTGCCATACTCCTCCGGCACCACCGGGC
TGCCCAAGGGCGTCATGCTCACGCACCGCAGCCTCATCACCAGCGTCGCACAGCAGGTGG
ACGGAGAGAACCCGAACCTGTACTTCAGGAAGGAGGACGTGCTGCTGTGCCTGCTGCCGC
TGTTCCACATCTACTCGCTCAACTCGGTGCTGCTGGCGGGGCTGCGCGCCGGGTCGGCGA
TGGTGATCATGCGCAAGTTCGACATCGGCGCGCTGGTGGAGCTGGTGCGCGCGCACGGCA
TCACGGTGGCGCCCTTCGTGCCGCCCATCGTGGTGGAGATCGCCAAGAGCCCCCAGGTCA
CCGCCGGCGACCTCGCGTCCATCCGCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGG
AGCTGCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTGCTCGGGCAGGGGTACGGGA
TGACGGAGGCCGGGCCGGTGCTGGCCATGTGCCTGGCGTTCGCCAAGGAGCCGTTCAAGG
TCAAGTCCGGGTCGTGCGGCACGGTGGTGCGCAACGCCGGGCTCAAGATCGTCGACCCCG
ACACCGGCGCCTCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGA
TCATGAAAGGTTACCTTAACGACCCAGAATCCACCAAGAACACCATCGACAAGGATGGCT
GGCTGCACACCGGAGACATCGGCATCGTCGACGACGACGACGAGATCTTCATTGTTGACA
GGCTCAAGGAGATCATCAAGTACAAGGGCTTCCAGGTGGCGCCGGCAGAGCTCGAGGCCC
TCCTCATCACCCACCCGGAGATCAAGGACGCCGCCGTCGTATCGCTGAAGGACGATCTTG
CTGGCGAAGTCCCGATCGCCTTCGTTATGCGGATCGAAGGCTCTGAAATCACCGAGGATG
ACATCAAAAAATTCGTCGCGAAGGAGGTTGTTTTCTACAAGAGGATCCACAAGGTCTTCT
TCACCGACTCAATCCCCAAGAACCCTTCAGGCAAGATCCTGAGGAAGGACTTGAGAGCCA
GGCTCGCCGCTGGCATCCCCAGCTAAGCGCTGCGGCCGCCCTCCGCTTCTCAGGTACTCA
GCCAGCCAGCAGGGTGCTGGTATAGATCATGTAATATTGGTGAATCTCCACGAAATGGTC
GGAGGAGGTTGAGTTTGTTGGTTCTTCCTGCTCATGTAATGTTGATAAAATGAAATGATA
TATGTAGATGTGTTGTTTTTGAGCATAAGAACAAGGCTGGTTTCCAAAGGGTATAATGTA
TACTTCTTTTCCAACAGATACCTTGTTCCAATCATATCAACTTTTTTCCTTCAAAAAAAA
AAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356005	2065	0.0	376 - 2065	100	1690 / 1690	CUST_18591_PI390587928 CUST_74_PI415269222	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_55027.2	3160	0.0	1 - 1672	100	1672 / 1672	CUST_18591_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_55027.1	2536	0.0	1 - 385	99	384 / 385	CUST_74_PI415269222 CUST_18591_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_70104.1	3295	0.0	1736 - 3150	85	1212 / 1425	CUST_18163_PI390587928 CUST_15036_PI390587928 CUST_4690_PI390587928 CUST_4691_PI390587928	ABC04674 ABC04676 ABC04677 ABC12471 ABC15844
MLOC_70104.2	2457	6e-168	307 - 939	84	530 / 634	CUST_4691_PI390587928 CUST_4690_PI390587928	ABC04674 ABC04676 ABC15844
MLOC_59078.2	1976	0.0	361 - 1727	78	1076 / 1388	CUST_405_PI415269222 CUST_13729_PI390587928	ABC04674 ABC04676 ABC15844
MLOC_58764.5	2096	0.0	215 - 1274	78	834 / 1072	CUST_36549_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844
MLOC_58764.6	1965	1e-165	209 - 1155	78	749 / 959	CUST_36549_PI390587928	ABC04674 ABC04676 ABC04677
MLOC_58764.7	1109	5e-164	13 - 872	79	690 / 872	None	ABC04674 ABC04676 ABC04677
MLOC_58764.4	2493	5e-119	1631 - 2244	79	489 / 616	CUST_36549_PI390587928	ABC04676 ABC04677 ABC15844
MLOC_58764.3	1484	1e-99	633 - 1046	83	344 / 416	CUST_4688_PI390587928	ABC04676 ABC04677
MLOC_58764.2	2246	1e-99	746 - 1159	83	344 / 416	CUST_36549_PI390587928 CUST_4688_PI390587928	ABC04676 ABC04677
MLOC_58764.1	2571	1e-99	759 - 1172	83	344 / 416	CUST_4688_PI390587928 CUST_36549_PI390587928	ABC04676 ABC04677