barSeed - Barley Seed Development Database

Probe ABC04674

Source Contig ABC04674

barSeed

Links

Affymetrix Source Sequence (1560 bp)

>ABC04674 1560
GGCTGATCGTCACCGAGGCCTGCGCCGTCGACAAGGTGCGCGCCTTCGCCGCCGAGCGCG
GCATCCCCGTGGTCACCGTCGACGGCCCGGCCTCCGAATCCGACGGCTGCCTCGCGTTCA
ACGAGACCCTGCTGCCCGAGGAGCCGCTCGCCGCCGACGAGGCGGTCGACCCCGACGACG
TGGTGGCCCTCCCCTACTCGTCCGGCACCACGGGCCTCCCCAAGGGCGTCATGCTCACCC
ACCGCAGCCTCGTCACCAGCGTCGCCCAGCAGGTGGACGGGGAGAACCCGAACTTGTACT
TCGGGGAGGAGGACGTGGTGCTGTGCGTGCTGCCGCTGTTCCACATCTACTCGCTCAACT
CGGTGCTGCTGGCGGGGCTGCGGGCCGGGTGCGCGATCGTGATCATGCGCAAGTTCGACC
ACGGCGTGCTGGTGCGCCTGGTGCGCGCGCACGGGGTCACCGTGGCGCCCTTCGTGCCGC
CCATCGTCGTCGAGATCGCCAAGAGCGACCGGGTGACCGCCGCCGACCTCGCCTCCATCC
GCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGGACCTCCAGGACGCCTTCATGGCCA
AGATCCCCAACGCCGTGCTCGGACAGGGGTACGGGATGACGGAGGCCGGGCCGGTGCTGT
CCATGTGCCTGGCGTTCGCCAAGGAGCCGTTCGCCGTCAAGTCGGGGTCCTGCGGCACGG
TGGTGCGGAACGCGGAGCTCAAGATCGTCGACCCCGACACCGGCGCCTCCCTCGCCCGCA
ACCTGCCCGGGGAGATCTGCATCCGCGGCAAGCAGATCATGAAAGGTTACCTAAATGATC
CGGAGGCCACAAAGAACACCATTGACAAGGATGGTTGGTTGCACACTGGAGACATCGGTT
ATGTCGATGATGATGACGAGATCTTCATCGTCGACAGGCTCAAAGAGATAATCAAATACA
AGGGATTCCAAGTACCTCCTGCGGAACTCGAAGCCCTTCTCATTACACACGCTGAAATCA
AAGATGCTGCTGTTGTATCGATGCAAGATGAACTTACTGGTGAAGTACCAGTTGCATTCA
TTGTGCGGATTGAAGGCTCTGAGATCAGCGAGAGCGAGATCAAGCAGTTTGTTGCAAAAG
AGGTTGTTTTCTACAAAAGGATCCACAAAGTTTTCTTTGCGGACTCGGTTCCGAAGAGTC
CTGCCGGCAAGATCCTCAGGAAGGACCTGAGAGCAAAGCTCGCTGCAGGCATCCCAGGCA
GTGGAAGCACAGCGTCTAAGAGCTGAGTCCCATCTTACACACACAACTCTGTCCAAAATC
ATGTAATGTTCTCAATGAAATGGCAACAATATTATTACATATAGAAGGCCTGGCACATGT
TCAATTCTTTTAATTGGCTAAGTCACATAATTTGTTTGTTTGTTCGTCCGGTGGTGTGTA
ACATGTCATGTATAGATACCGACTCTTTTTGACAACAAAGGCTGATTATAATGTATACGG
CTTGTGATTTATACCGCAAGTTGAATTAAACTCATTTGTTCCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_70104.1	3295	0.0	1449 - 2990	99	1540 / 1542	CUST_4690_PI390587928 CUST_4691_PI390587928 CUST_15036_PI390587928 CUST_18163_PI390587928	ABC04674 ABC04676 ABC04677 ABC12471 ABC15844
MLOC_70104.2	2457	0.0	1529 - 2155	99	626 / 627	CUST_4690_PI390587928 CUST_4691_PI390587928	ABC04674 ABC04676 ABC15844
AK356005	2065	0.0	564 - 1811	85	1068 / 1263	CUST_74_PI415269222 CUST_18591_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_55027.2	3160	0.0	237 - 1484	85	1068 / 1263	CUST_18591_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_55027.1	2536	0.0	725 - 1829	85	956 / 1120	CUST_74_PI415269222 CUST_18591_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844 ABC36284
MLOC_59078.2	1976	0.0	647 - 1721	78	842 / 1082	CUST_13729_PI390587928 CUST_405_PI415269222	ABC04674 ABC04676 ABC15844
MLOC_58764.7	1109	4e-139	46 - 866	78	649 / 833	None	ABC04674 ABC04676 ABC04677
MLOC_58764.5	2096	4e-139	448 - 1268	78	649 / 833	CUST_36549_PI390587928	ABC04674 ABC04676 ABC04677 ABC15844
MLOC_58764.6	1965	4e-139	329 - 1149	78	649 / 833	CUST_36549_PI390587928	ABC04674 ABC04676 ABC04677
MLOC_59078.3	1354	5e-84	224 - 846	76	475 / 625	None	ABC04674 ABC15844
MLOC_59078.1	2241	2e-77	661 - 1040	81	308 / 382	CUST_405_PI415269222 CUST_13729_PI390587928	ABC04674 ABC15844