- Probe CUST_18163_PI390587928
- Source Contig U35_45545
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18163_PI390587928 | Hv_44K_v2 | CTCTTCTTTGCTGGTGCTACGAGCGGCGATATGAGCAAAGTTCTTCAAAGACCGAAAAAA | 11 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.034 | 3.651 | 1.125 | 0.758 | 0.337 | 0.522 |
| Raw | 81.297 | 116.731 | 32.120 | 38.683 | 4.431 | 8.788 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70103.1 | 1355 | 3e-21 | 1244 - 1301 | 98 | 57 / 58 | plus | ABC12471 |
| MLOC | MLOC_70104.1 | 3295 | 3e-21 | 1241 - 1298 | 98 | 57 / 58 | plus | ABC04674 ABC04676 ABC04677 ABC12471 ABC15844 |
| JLOC1 | JLOC1_46505.1 | 1324 | 2e-21 | 1244 - 1301 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_45545 | 520 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (520 bp)
>U35_45545 520 Hv_44K_v2 TTTTTTTTTTTTTTTTTCGGTCTTTGAAGAACTTTGCTCATATCGCCGCTCGTAGCACCA GCAAAGAAGAGGGTGCATGGTCCATGAACATTACACAGAGAGTACATACATATAAGATAC AACTACACAAGCACACTGATACATATTTTTCTGGAGGAACACACTACTGCAGCACACATA CAGACAGTCATGTCTAATGCCTTCTCACACTAGTAGTGACACAACGAAATGGAAGAAAAG CCCAAGGAGTCCACTTGGGCGTAGTCGGGCCGAGCGTCTCCTAAAGGCGGCTAGCTGCTG GTGATCGATCATCGGGAGCCCACCACCACCCTGGTACTGGGTGAGGTTCATGGGCCGGGC CGGGCCGGGCCGGCTACTTTGTGGTGGAGGAGGAGCGGTGAGGGTGGGAGCAAAGGGAGG GGTANAGGCGGAAAAGGTTGCGGGCGGAAAGCGCAAAAAGGACGGCGGTGCCGACGGCGG CAAACCCGCCGAAGACGAGGCTCCCGGCGACCTGCTGGCA
Homology of Contig U35_45545 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |