barSeed - Barley Seed Development Database

Probe ABC04424

Source Contig ABC04424

barSeed

Links

Affymetrix Source Sequence (1362 bp)

>ABC04424 1362
CTTAGCTTAGCCTTAGCTAGCTAGCTTACTCCACAGTGCGCAAAGCACACCACATCAACG
ATGGCGACTACGGGCAGCCGTAGTACACTGGTTCTGGTCTATCTGAGCGTCGCAGTGCTA
GTCTCCCCTGCCCTGTCCGCCCCTCTGGACGGCGCCGGCTTCCACTCGGCGACGTGCCCG
CAACTGGAGAGCATCGTGTTCTCCTCCGTGCAGGCGGCGCTCCAGCGGGAGGTGGCGCTC
GCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCCCGCAGGGCTGCGACGCGTCC
GTGTACCTCAAGGGCAGAGGCACGGAGCAGGCCATGGGGCCCAACACCACGCTGCAGCCG
CGGGCGCTGCAGCTCGTGGAGGACATCCGCGCCAAGGTGCACGCCGCGTGCGGCCCCACC
GTGTCCTGCGCCGACATCTCGGCGCTCGCCACCCGCGACGCCGTCGTGCTCTCCGGCGGG
CCCAACTACACGGTACCGCAGGGCCAGTTCGACAGCCTCGCCCCGGCGTCTCAGAACGTC
GTCAATGGCCTCCCGTCGCCGGCGACCTCCAGCGTATCCGCCCTCGCGCGCGCCTTCAGC
GGCAAGGGCCTCCGTGACCTGGCCGACCTGGTGGCGCTCTCCGGCGCGCACACCGTCGGG
AGGACTGGCTGCCCGTTCTTCCGTGACCGGGCTCAGCGCATGGACGACGCCTTCTCCCGG
AGGCTGGCGGCCAACTGCAGCGCGGCCCCGAACCGGCTCCAGAACCTGGACGTGGTGACC
CCCGACCTGTTCGACAACGGCTACTACAAGGCGCTGGTGAACAGCCAGGGCGTCTTCACC
TCCGACATGGTGCTCATCAAGGACCGAACCACGGCGCCCATCGTGCAGCAGTTCGCGCGG
AGCAAGGACGCCTTCTTCGCGCAGTTCGCCAAGTCCATGGCCAAGCTCGCCACCGCGCCG
AGGCCCGGCGGGAACGTCGGCGAGATCCGCCGCAACTGCTTCAGCCCCAACGCCCTGCGC
GCCATCGACACCGTCGTCGACGCCGGCGAGGAGGAAGGATTCGCGGCTTCTGCCTGATTT
GCGTGCGTGCATTTGCTGGCACGTGCATGGCTTCGTGTATGTTAGCTGTTAATTTCTGCT
CGCGTGTGTGCGTGTTCGTGCTTTGGATCTGTAGTGTAATAAGAGACTTCATCAGTGAGT
CGCTGAGTGCTTGCTTGCTCAAGGTTCAACATTTCAATGAAATTTCACCTGCTGGCCTAC
AGAAAAAAAAAAAACCTCGAAATTTTGGACCAGATTCAAACTTGTTTCAAACTAATTTTA
TAATATATCAGGACAAGATTCGTCTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK354769	1400	0.0	12 - 1359	98	1321 / 1349	CUST_6651_PI390587928	ABC04423 ABC04424 ABC04425
MLOC_60133.1	1049	0.0	116 - 1049	97	911 / 935	CUST_6651_PI390587928	ABC04423 ABC04424 ABC04425
MLOC_4683.1	1338	0.0	150 - 1237	90	982 / 1089	CUST_6652_PI390587928	ABC04423 ABC04424 ABC04425
MLOC_4683.2	843	0.0	5 - 699	89	621 / 696	CUST_6652_PI390587928	ABC04424
MLOC_7937.1	1775	2e-162	542 - 1449	78	720 / 918	CUST_3839_PI390587928 CUST_3835_PI390587928	ABC02111 ABC04423 ABC04424
MLOC_58897.1	370	1e-128	1 - 259	99	256 / 259	None	ABC04424
MLOC_7937.2	915	3e-65	215 - 589	79	296 / 375	None	ABC02111 ABC04424
MLOC_54893.2	1419	5e-63	717 - 1043	80	267 / 332	CUST_15107_PI390587928 CUST_27403_PI390587928	ABC04424
MLOC_54893.1	1373	5e-63	767 - 1093	80	267 / 332	CUST_15107_PI390587928 CUST_27403_PI390587928	ABC04424