barSeed - Barley Seed Development Database

Probe CUST_3839_PI390587928

Source Contig U35_14342

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3839_PI390587928	Hv_44K_v2	GTGCAATGTTCGTGTAGCAATAAAGAGACGGAGCTTTTGATCGTCGTTGCATCTAAAAAA	570	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.826	3.692	1.690	0.694	0.195	0.224
Raw	960.372	1978.262	801.666	558.637	50.016	66.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7937.1	1775	3e-21	323 - 376	100	54 / 54	minus	ABC02111 ABC04423 ABC04424
JLOC1	JLOC1_5253.1	1935	2e-21	438 - 491	100	54 / 54	minus
Harvest21	ABC02120	729	3e-25	660 - 719	100	60 / 60	plus
Harvest35	U35_14342	641	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_14342 641 Hv_44K_v2
CGGGCGGTCGCAGTGCGGCAGCTTCGTCGACCGGTCCCAGCGCGCCGACGACACCTTCTC
GAGGAAGCTGGCGGCCAACTGCAGCAAGCACCCGGACCGGCTGCAGAACCTGGACGTGAT
CACCCCGGACCTGTTCGACAACGCGTACTTCAAGGCTCTCGGGTTCAACCAGGGCGTGTT
CACCTCCGACATGGCGCTGGTCAAGAACAAGACCACGGCGCCCATCGTGAAGCGGTTCGC
GGAGAGCAAGGAGGCCTTCTTCGGGCAGTTCGCCAGGTCCATGGAGAAGCTCGCCAGGGT
GCCCAAGCCGGCGGGCAACGTGGGCGAGATCCGCCGCTTCAGCTGCTTCAGGCCCAACGC
CCAGCGCGCCGACGCTGCCGTGGACGACGCCGCCGGTGAGGAGGAGGAGGAGGAGGGCTT
CGCCGCCTCCGCCTGATCTGACCTGATGGCTCGGTCAAGTACGTAGTACGCGCGTGCGTC
AGGTCGTCGTCGGCAAGCAGGCTAGCTGCCCGTGCGTTGTGCTAGCGTGCATGGCCATGT
TTGAGTTCTCGGCTTGCTTCTTTTTTCTGAGTGCAATGTTCGTGTAGCAATAAAGAGACG
GAGCTTTTGATCGTCGTTGCATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g27220.1	339	4e-59
Arabidopsis v10	None