barSeed - Barley Seed Development Database

Probe CUST_3835_PI390587928

Source Contig U35_14346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3835_PI390587928	Hv_44K_v2	GCTTCTTTTTTCTGAGTGCAATGTTCGTGTAGCAATAAAGAGACGGAGCTTTCGATCGTC	1222	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.855	3.574	1.685	0.689	0.148	0.208
Raw	1222.849	2441.770	1012.503	700.737	48.199	77.048

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7937.1	1775	7e-23	332 - 391	98	59 / 60	minus	ABC02111 ABC04423 ABC04424
JLOC1	JLOC1_5253.1	1935	4e-23	447 - 506	98	59 / 60	minus
Harvest21	ABC02122	1300	3e-25	1218 - 1277	100	60 / 60	plus
Harvest21	ABC02120	729	1e-23	645 - 704	98	59 / 60	plus
Harvest21	ABC02111	476	6e-22	395 - 454	97	58 / 60	plus	ABC02111
Harvest35	U35_14346	1349	3e-25	1223 - 1282	100	60 / 60	plus
Harvest35	U35_14342	641	1e-23	556 - 615	98	59 / 60	plus
Harvest35	U35_14341	655	6e-22	573 - 632	97	58 / 60	plus

Contig Sequence (1349 bp)

>U35_14346 1349 Hv_44K_v2
CTCAAGCTAGCTTCAGCTCGAGCTCGAGCTTCACTTGAGCACAAAAAATGGCGAGCAGCT
CTGTAGCAGCACTGGCCGTCGTCCTGGCCACCGCGGCCACGCTGCTTCTCTCCCCGGCCA
CGTCCCTGCCCGTCTTCACCGGCGACGACGGCGCCTCCCCTGGCTTCCACTCGGCGTCGT
GCCCGCAGCTGGACGGCATCGTGTGGTCGTCCGTGGAGGCGGCGCTGCGGCAGGACGTGG
CGGTGGCGGCGGGCATGCTCCGCCTCTACTTCCACGACTGCTTCCCGCAGGGCTGCGACG
CCTCCATCCTCCTCAACACCACCGACGCCCGCGAGACGGCGCTGGGCCCCAACCTCACCA
TCCAGCCGCGCGCCATGCAGCTCATCGAGTCCATCCGCGCCAGGGCGCACGCCGTCTGCG
GGCCCGTCGTCTCCTGCGCCGACATCACCCTGCTCGCCACCCGCGACATCATCGTCATCT
CCGGCGGGCCCTGGTTCAACGTGCCGCAGGGCAACCTCGACAGCCTGGCCCCCGCGGCGC
AGGAGAAGGTGTTCGAGCTCCCGGCGCCGGACACGGCGAGCGTGGCCACGCTCGTGACCT
CCTTCGCCACCAGGGGCCTCGGCGACGTCGCCGACCTCGTGGCGCTCTCCGGCGCGCACA
CCATCGGGCGGTCGCAGTGCGGCAGCTTCGTCGACCGGTCCAAGCGCGCGGACGACACCT
TCTCGAGGAAGCTGGCGGCCAACTGCAGCAAGCACCCGGACCGGCTGCAGAACCTGGACG
TGATCACCCCGGACCTGTTCGACAACGCGTACTTCAAGGCTCTCGGGTTCAACCAGGGCG
TGTTCACCTCCGACATGGCGCTCGTCAAGAACAAGACCACCGCGCCCATCGTGAAGCGGT
TCGCGGAGAGCAAGGAGGCCTTCTTCGGGCAGTTCGCCAGGTCCATGGAGAAGCTCGCCA
TGGTGCCCAAGCCGGCGGGCAACGTGGGCGAAATCCGGCGTTTCAGCTGCTTCCGGCCCA
ACGCCCAGCGCGCCGACGCTGCCGTGGACGACGCCGCCGGTGTGGAGGAGGAGGGCTTCG
CCGCCTCCGCCTGATCTGACCTGATGGCTCGGTCAAGTACGTAGTACGCGCGTGCGTCAG
GTCGTCGTCGGCAAGCAGGCTAGCTGCCCGTGCGTTGTGCTAGCGTGCATGCAGGGCATG
GCCATGTTTGAGTTCTCGGCTTGCTTCTTTTTTCTGAGTGCAATGTTCGTGTAGCAATAA
AGAGACGGAGCTTTCGATCGTCAAAAAAAAAAAAAAAAAAAAAAATTGGTGAACTATGGC
AATTAACCGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59260.1	339	3e-129	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27220.1	339	1e-146
Arabidopsis v10	AT1G71695.1	358	2e-61	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358