barSeed - Barley Seed Development Database

Probe ABC02493

Source Contig ABC02493

barSeed

Links

Affymetrix Source Sequence (1266 bp)

>ABC02493 1266
GAGATGGATGTTGGGATCGGTCTGAGGTACGACTGGGGCAAGTTCTACGCGTCCAAGACC
TTCTACGACCCTGCCAAGAACCGCCGCGTGCTGTGGGGATGGATCGGCGAGACCGACTCC
GAGCGCGCCGACGTGGCCAAGGGATGGGCGTCCCTAATGTCGATCCCAAGGACGGTGGTG
CTGGACGAGAAGACCCGGACGAACCTCATCCAGTGGCCCGTCGTGGAGATCGAGACGCTC
CGCATCAACTCCACCGACCTCGGTGGTACCACCATCGACACTGGGAGCGTGTTCCCTCTC
CCGCTCCGTCGCGCCACCCAGCTCGACATTGAGGCCACCTTCCACCTCGACGCCTCAGCT
GTTGCCGCTGTCAACGAGGCTGATGTCGGCTACAACTGCAGCACCAGCGGCGGCGCCGCC
AACCGTGGCGCGCTCGGCCCCTTCGGACTCCTCGTCCTTGCTGACGGTGCCCTCCAGGAG
CAGACGGCCGTGTACTTCTACGTGTCGAGGGGCCTCGATGGAGGCCTCCAAACCCATTTC
TGCCAGGACGAGTCGCGATCGTCGCTGGCCCAGGACGTCGTGAAGCGGGTGGTCGGTTTC
ACCGTGCCTGTGCTTGACGGTGAGGATCTATCCCTCAGGGTGTTGGTGGACCACTCGATC
GTGGAGAGCTTCGCCATGGGTGGCAGGTCCACGGCAACGTCGAGGGTGTACCCGACGGAG
GCCATCTACGCCGCCGCAGGCGTGTACCTTTTCAACAACGCCACCAGCGCCGCCGTCACC
GTCGAGAAGCTCATGGTGCATGAGATGGACGACTCCTACAACCAGATCTTCACGGCCGAA
GACGCCTCAGCCGCCTTGTAGCTGAAATTAATCAAGCTCTTGGCCAGGTAATGCATATTC
ACCTATACAACATGTTATGATTCGATCGATCACATTGATTGATCGGAAGCTTCCTCCCTC
ATGGATGGATGGAGATGGAGTACTAGCTACGTACTCTAGTCATCTTCCTGTCTGTTTGTT
TGTTTGTTGTTGTTTTTTTCTTTTTTCTTTTTGGATTTTTGGGTTCTTGGCGAGATGAAT
TAGGTAGATGATTTGTTGGCAGGATGATCACTGCCTTCCAAGTGTAACTACTGGCAGGAT
GGATATGTATCCTGCAGCGGGACTATGATGATGATGATGATCATATTGATCAATCAATTG
TAAATGGAATTATTTGGGGAACGAGAGGNNGGCNACGCGGTTGCGCTGCTACCAAATTTT
CGAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_56803.2	2713	0.0	1442 - 2698	99	1255 / 1265	CUST_9740_PI390587928	ABC02490 ABC02493 ABC02495
AK362010	2458	0.0	1201 - 2458	98	1243 / 1262	CUST_9740_PI390587928	ABC02490 ABC02491 ABC02493 ABC02495
MLOC_56803.1	2914	0.0	1697 - 2914	99	1217 / 1223	None	ABC02490 ABC02493 ABC02495
MLOC_56803.3	2076	3e-75	1903 - 2070	97	166 / 171	CUST_9740_PI390587928	ABC02490 ABC02493 ABC02495
MLOC_56803.4	1148	0.0	748 - 1148	99	396 / 401	None	ABC02490 ABC02493
MLOC_58270.2	2500	7e-146	293 - 1110	78	641 / 820	CUST_31875_PI390587928	ABC02493 ABC04521 ABC13653
MLOC_58270.1	1906	7e-146	293 - 1110	78	641 / 820	CUST_31876_PI390587928 CUST_31875_PI390587928	ABC02493 ABC04521 ABC13653
MLOC_58270.3	2452	7e-146	212 - 1029	78	641 / 820	CUST_31876_PI390587928	ABC02493 ABC04521 ABC13653
MLOC_66445.1	2225	5e-118	134 - 964	76	636 / 834	CUST_8476_PI390587928	ABC02490 ABC02491 ABC02493 ABC02496 ABC50608
MLOC_17743.1	653	5e-113	14 - 652	78	507 / 646	None	ABC02493