barSeed - Barley Seed Development Database

Probe CUST_31876_PI390587928

Source Contig U35_15652

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31876_PI390587928	Hv_44K_v2	ATCCCAACGGTCCGGTGTACTACGGCGGATGGTACCACTTCTTCTACCAGTACAACCCGT	451	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.298	1.066	1.139	0.628	0.157	0.185
Raw	57.996	69.259	67.983	55.289	3.978	6.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58270.1	1906	2e-24	1798 - 1857	100	60 / 60	minus	ABC02493 ABC04521 ABC13653
MLOC	MLOC_58270.3	2452	2e-24	1717 - 1776	100	60 / 60	minus	ABC02493 ABC04521 ABC13653
JLOC1	JLOC1_37843.1	2506	8e-25	553 - 612	100	60 / 60	plus
Harvest21	ABC04524	519	3e-25	452 - 511	100	60 / 60	plus
Harvest21	ABC04522	1793	3e-25	458 - 517	100	60 / 60	plus
Harvest35	U35_15653	2394	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_15652	520	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_15652 520 Hv_44K_v2
AAACAATCTACCCACCCACCTCGGGATCATCGGGCCTGCACCGGCGCCGCCATGGATTCC
TCTCGCGTCATTCTCATCCCCGGCACGCCGCCGCTGCCCTACGCCTACGAGCAGCTGCCC
TCCTCCTCCGCCGACGCCAATGGCCAGGAGGAGCAGCGGGCCGGCGGTGGCCTGAGGTGG
CGTGTGTGCGCCGCCGTGCTTGCCGCCTCGGCCGTGCTGGCGCTCGTCGTCGCCGCCGCG
GTCTTCGGGGCCCGCCCCCGTGACGCGGTGGCCGCCTCCGTGCCGTCCATTCCGGCGACG
GGGTTCCCGAGGAGCAGGGGCAAGGAGCACGGCGTGTCGGAGAAGACGTCGGGGGCCTAC
TCCGCCAACGGCGGCTTCCCGTGGAGCAACGCCATGCTGCAGTGGCAGCGCACCGGCTTC
CATTTCCAGCCGGACAAGTACTACCAGAACGATCCCAACGGTCCGGTGTACTACGGCGGA
TGGTACCACTTCTTCTACCAGTACAACCCGTCGGGGTCGG

Homology of Contig U35_15652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None