barSeed - Barley Seed Development Database

Probe ABC02408

Source Contig ABC02408

barSeed

Links

Affymetrix Source Sequence (876 bp)

>ABC02408 876
GGGCTAACCATTAGGCAAAAGCGAACTTTCTTTTCTTTTCCCAAGAGATCTCCGTTCGTG
TCTGTACTCAAGTGTTTGTTCGAGCCATCAGCCATGGCCTCCAACCAGGACAAGGCGAGC
TACCGCGCCGGCGAGGCCAAGGCCCACACCGAGGAGAAGGCCGGACAGGTGACCGGCGCG
GCCAAGGGCAAGGCGTACGAGGCCAAGGACCGGGCGTCAGGCGCGGCGGGGCAGGCGACG
GGGAAGGGGCAGGGCGCCGCGGAGGCCACGAAGCAGAAGGCCGGCGAGGCGGGGCAGAAG
ACGTCCGAGACGGCGCAGGCCGCCAAGGAACGGGCCGCCGAGGGCAAGGACGAGGCCGGC
AGCTACCTCGGCAGCACGGCCGAGGCCGCCAAGCAGAAGGCCTCCGCGGCGACGGGGTAC
ACGCAGGACAGGGCCTCCGACGCGGCGCAGTACACCAAGGACTCCGCCGTCGCCGGCAAG
GACAAGACCGGCAGCGTCCTCGGTCAGGCCGGCGAGCAGGTGAAGAACGCGGTGGTCGGC
GCCAAGGACGCGGTGGCGAACACGCTGGGGATGGGGGGAGATAACACGGCCAGCGCAACC
AAGGACACCAGCACCACCGAGACGGTCACCAAGAGTCGTCACTAGATATACCTCTCGCGG
TTGCATATATATGCTTTTATTTCCTTCAGTTCCTGGAGCTCCAGATTCCTGTGGCGTGTC
CGAGTCTGTCTGTGTGTGTCACTCAAGGTCGGGTGAGGATGTCTCACTGACGAGTATCTT
GGTGTTCAGAGTTCTCGTTTTAAGTTCAGCAATGGTGTAATAATAACTAATAACGATAAT
ATAGCTATTTCGTCCTTAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_19482.1	1002	0.0	162 - 992	95	819 / 858	CUST_38149_PI390587928 CUST_16041_PI390587928	ABC02405 ABC02406 ABC02408
MLOC_19482.2	565	4e-67	420 - 561	99	141 / 142	CUST_16041_PI390587928 CUST_38149_PI390587928	ABC02408
MLOC_19482.3	304	4e-142	6 - 294	98	284 / 289	None	ABC02408
MLOC_19482.4	264	7e-100	54 - 254	99	200 / 201	None	ABC02408
MLOC_77777.2	1095	1e-57	615 - 846	84	198 / 235	CUST_20151_PI390587928	ABC02405 ABC02406 ABC02407 ABC02408 ABC31246
MLOC_77777.3	1161	1e-57	681 - 912	84	198 / 235	CUST_20151_PI390587928	ABC02405 ABC02406 ABC02407 ABC02408 ABC31246
MLOC_72442.2	1034	1e-53	280 - 510	84	198 / 237	CUST_12490_PI390587928	ABC02405 ABC02406 ABC02407 ABC02408 ABC37877
MLOC_72442.1	1126	1e-53	304 - 534	84	198 / 237	CUST_12490_PI390587928 CUST_38151_PI390587928	ABC02405 ABC02406 ABC02407 ABC02408 ABC37877
MLOC_6950.1	1062	4e-52	254 - 484	83	194 / 234	CUST_38174_PI390587928	ABC02405 ABC02406 ABC02407 ABC02408 ABC31246
MLOC_6950.3	904	4e-52	185 - 415	83	194 / 234	None	ABC02405 ABC02406 ABC02407 ABC02408 ABC31246