barSeed - Barley Seed Development Database

Probe CUST_38151_PI390587928

Source Contig U35_791

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_38151_PI390587928	Hv_44K_v2	GATAACGAGGACACTCGAAGGCGGCAATAAAGTTGTATGTGATCGAATTTCTGTAAAAAA	924	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.325	0.776	0.461	1.486	1.675	1.473
Raw	5.347	23.071	12.194	58.737	23.335	23.502

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72442.1	1126	9e-22	13 - 67	100	55 / 55	minus	ABC02405 ABC02406 ABC02407 ABC02408 ABC37877
JLOC1	JLOC1_48179.4	1008	5e-22	933 - 987	100	55 / 55	plus
JLOC1	JLOC1_48179.3	752	5e-22	677 - 731	100	55 / 55	plus
JLOC1	JLOC1_48179.2	718	5e-22	643 - 697	100	55 / 55	plus
JLOC1	JLOC1_48179.1	782	5e-22	707 - 761	100	55 / 55	plus
Harvest21	ABC02407	1032	3e-25	925 - 984	100	60 / 60	plus	ABC02407
Harvest21	ABC37877	534	2e-22	427 - 481	100	55 / 55	plus	ABC37877
Harvest21	ABC37726	385	6e-22	12 - 72	97	59 / 61	minus
Harvest35	U35_791	1032	3e-25	925 - 984	100	60 / 60	plus

Contig Sequence (1032 bp)

>U35_791 1032 Hv_44K_v2
GATCCATTCCAAGTGAGCTAAGCAACAGCCTAAAGCGAGTCCGAGTGGTGATTCCAGTTC
GTGTTTGTTTGAGCTAGATCGTGAGACGAAGATGGCCTCCAACCAGAACCAGGGGAGCTA
CCACGCCGGCGAGACCAAGGCCCGCACCGAGGAGAAGACCGGGCAGATGATGGGCGCCAC
CAAGCAGAAGGCGGGGCAGACCACCGAGGCCACCAAGCAGAAGGCCGGCGAGACGGCCGA
GGCCACCAAGCAGAAGACCGGCGAGACGGCCGAGGCCGCCAAGCAGAAGGCCGCCGAGGC
CAAGGACAAGACGGCGCAGACGGCGCAGGCGGCCAAGGACAAGACGTACGAGACGGCGCA
GGCGGCCAAGGAGCGCGCCGCCCAGGGCAAGGACCAGACCGGCAGCGCCCTCGGCGAGAA
GACGGAGGCGGCCAAGCAGAAGGCCGCCGAGACGACGGAGGCGGCCAAGCAGAAGGCCGC
CGAGGCAACCGAGGCGGCCAAGCAGAAGGCGTCCGACACGGCGCAGTACACCAAGGAGTC
CGCGGTGGCCGGCAAGGACAAGACCGGCAGCGTCCTCCAGCAGGCCGGCGAGACGGTGGT
GAACGCCGTGGTGGGCGCCAAGGACGCCGTGGCAAACACGCTGGGCATGGGAGGGGACAA
CACCAGCGCCACCAAGGACGCCACCACCGGCGCCACCGTCAAGGACACCACCACCACCAC
CAGGAATCACTAGACGCATGCGTTCGCGCTTAATTTCCGTTCCTTTAGTCGTGTTTGGTC
GTTCGAGGGCCTTCTACATATTTCATATTTGTATGTTTCCACTCTTTCATGATTTCCGCT
CATTTAGTGTAAGTTTGCCTCCGATTTGATGTACTCGTCTCTGGTTCTGTAATGAGTTAT
AATCCATGGGCTTTGGTGTAAATGGATAACGAGGACACTCGAAGGCGGCAATAAAGTTGT
ATGTGATCGAATTTCTGTAAAAAAAAAAAAAAAAAGAAAACATATATTGTGTTTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None