barSeed - Barley Seed Development Database

Probe ABC02198

Source Contig ABC02198

barSeed

Links

Affymetrix Source Sequence (1406 bp)

>ABC02198 1406
CGCCTCCCCCACCGCTCCGCCCCCATCCCGTCCAGCCCCCTCCCCCGCTTTCCCTTTCCC
CTTTCCCCTCTCCCTTCCGCTCCAGCGCGCGCGCGAGAGCTAGCTTCTCTTCGCTTCTCG
GTTAGCTGAGCTGATTTGGTGGACGGAGGTGGTGGTGTGGGAGCGGCTGAGAGGCGCGTG
GCGTGGGTGGCAGGAGGAGGAGGAGGCTGATCGATCTGGAGCTAGCGGTACCGGACGCGG
CGGCCGGCGGCGGCGGCATGGGGCGGGGCCGGGTCGAGCTCAAGCGGATCGAGAACAAGA
TCAACCGCCAGGTCACCTTCGCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCCTACGAGC
TCTCCGTGCTCTGCGATGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCT
ACGAGTTCTGCAGCGGCCAGAGCATGCCCAAAACACTTGAGAGATACCAAAAATGCAGTT
ATGGTGGGCCAGATACAGCAATACAAAATAAGGAGAATGAGTTAGTGCAGAGCAGTCGAA
ACGAGTACCTCAAACTGAAAGCACGAGTGGAGAATTTGCAGAGAACTCAACGAAATTTGC
TTGGCGAAGATCTCGGGTCACTTGGCATCAAAGATCTTGAGCAGCTCGAAAAGCAACTTG
ATTCATCCTTGAGGCACATAAGATCCACAAGGACACAGCATATGCTTGACCAGCTCACTG
ATCTCCAGAGGAAGGAACAAATGCTGTCTGAAGCAAATAAGTGCCTTCGAAGAAAACTGG
AGGAGAGCAGCCAGCAGATGCAGGGCCAAATGTGGGAGCAGCATGCCGCCAACTTGCTCG
GCTACGACCATCTGCGACAGTCCCCGCACCAGCAGCAGGCGCAACACCACGGCGGCAACG
GCTTCTTTCACCCCCTGGACCCTACCACTGAGCCTACACTTCAGATAGGGTATACTCAGG
AGCAGATAAACAACGCGTGCGTGGCGGCGTCCTTCATGCCGACATGGCTGCCCTGAAGAT
CGATGATCCAACCAGCTAATAAATGTGCGACGGTGCTTGCACCTCCGTCGTATGTATACT
CTACCTACGTATATTCCGGGGCCGACCGGGAGCGACTAGTACCGCGTTCGCGTACGTCTC
ATAGTTCTGTGTCTGTGTTTGTGTCCTTGTGTGAAAAACTTTTGTGATCGACGTGTATGT
CAAGACTGCCTGGTACAAAAGGCCCGCACGTACGTACGTCTCCGTTACTATGGGCTGCTG
CTGGCTCCTGCATAAAGGACGACGGTACAGTGCAGTGCTTGTAGTCCTGTACGTTTCGTA
ATTTCCAGTCCAACTATATATATAGTTGTATGATGATGTGATGTTATCAAGTATGTGTGC
GTGACTATNAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374424	1326	0.0	2 - 1326	99	1324 / 1325	CUST_40955_PI390587928 CUST_19824_PI390587928	ABC02198 ABC02200
MLOC_37733.1	1451	0.0	544 - 1415	99	872 / 873	CUST_19824_PI390587928	ABC02198
MLOC_37733.2	2072	0.0	1422 - 2041	99	619 / 621	CUST_14143_PI390587928 CUST_19824_PI390587928	ABC02198
AK249904.1	1037	2e-136	68 - 614	83	455 / 549	None	ABC02198 ABC02200
MLOC_6584.1	404	2e-132	139 - 402	99	262 / 264	None	ABC02198
MLOC_56472.2	1034	1e-118	1 - 482	83	401 / 484	None	ABC02198 ABC02200
MLOC_56472.1	466	2e-112	1 - 452	83	377 / 454	None	ABC02198 ABC02200
MLOC_49876.1	1024	3e-80	1 - 166	99	165 / 166	None	ABC02198 ABC02200
MLOC_52944.1	1578	2e-67	865 - 1075	89	190 / 214	None	ABC02198 ABC02199 ABC02200 ABC11029
MLOC_52944.2	1441	2e-67	863 - 1073	89	190 / 214	None	ABC02198 ABC02199 ABC02200 ABC11029
AK374272	1161	9e-66	117 - 327	88	189 / 214	None	ABC02198 ABC02199