barSeed - Barley Seed Development Database

Probe CUST_19824_PI390587928

Source Contig U35_690

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19824_PI390587928	Hv_44K_v2	GTCCTGTACGTTTCGTAATTTCCAGTCCAACTATATATATAGTTGTATGATGATGTGATG	1303	GeneList: darkmagenta MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.718	4.491	1.165	0.817	0.272	0.392
Raw	4010.337	4507.931	983.086	1185.903	124.547	202.018

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374424	1326	2e-24	1265 - 1324	100	60 / 60	plus	ABC02198 ABC02200
MLOC	MLOC_37733.2	2072	2e-24	1954 - 2013	100	60 / 60	plus	ABC02198
MLOC	MLOC_37733.1	1451	2e-24	1328 - 1387	100	60 / 60	plus	ABC02198
JLOC1	JLOC1_24465.1	1490	8e-25	1328 - 1387	100	60 / 60	plus
Harvest21	ABC02198	1406	3e-25	1304 - 1363	100	60 / 60	plus	ABC02198
Harvest35	U35_690	1425	3e-25	1304 - 1363	100	60 / 60	plus

Contig Sequence (1425 bp)

>U35_690 1425 Hv_44K_v2
CGCCTCCCCCACCGCTCCGCCCCCATCCCGTCCAGCCCCCTCCCCCGCTTTCCCTTTCCC
CTTTCCCCTCTCCCTTCCGCTCCAGCGCGCGCGCGAGAGCTAGCTTCTCTTCGCTTCTCG
GTTAGCTGAGCTGATTTGGTGGACGGAGGTGGTGGTGTGGGAGCGGCTGAGAGGCGCGTG
GCGTGGGTGGCAGGAGGAGGAGGAGGCTGATCGATCTGGAGCTAGCGGTACCGGACGCGG
CGGCCGGCGGCGGCGGCATGGGGCGGGGCCGGGTCGAGCTCAAGCGGATCGAGAACAAGA
TCAACCGCCAGGTCACCTTCGCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCCTACGAGC
TCTCCGTGCTCTGCGATGCCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCT
ACGAGTTCTGCAGCGGCCAGAGCATGCCCAAAACACTTGAGAGATACCAAAAATGCAGTT
ATGGTGGGCCAGATACAGCAATACAAAATAAGGAGAATGAGTTAGTGCAGAGCAGTCGAA
ACGAGTACCTCAAACTGAAAGCACGAGTGGAGAATTTGCAGAGAACTCAACGAAATTTGC
TTGGCGAAGATCTCGGGTCACTTGGCATCAAAGATCTTGAGCAGCTCGAAAAGCAACTTG
ATTCATCCTTGAGGCACATAAGATCCACAAGGACACAGCATATGCTTGACCAGCTCACTG
ATCTCCAGAGGAAGGAACAAATGCTGTCTGAAGCAAATAAGTGCCTTCGAAGAAAACTGG
AGGAGAGCAGCCAGCAGATGCAGGGCCAAATGTGGGAGCAGCATGCCGCCAACTTGCTCG
GCTACGACCATCTGCGACAGTCCCCGCACCAGCAGCAGGCGCAACACCACGGCGGCAACG
GCTTCTTTCACCCCCTGGACCCTACCACTGAGCCTACACTTCAGATAGGGTATACTCAGG
AGCAGATAAACAACGCGTGCGTGGCGGCGTCCTTCATGCCGACATGGCTGCCCTGAAGAT
CGATGATCCAACCAGCTAATAAATGTGCGACGGTGCTTGCACCTCCGTCGTATGTATACT
CTACCTACGTATATTCCGGGGCCGACCGGGAGCGACTAGTACCGCGTTCGCGTACGTCTC
ATAGTTCTGTGTCTGTGTTTGTGTCCTTGTGTGAAAAACTTTTGTGATCGACGTGTATGT
CAAGACTGCCTGGTACAAAAGGCCCGCACGTACGTACGTCTCCGTTACTATGGGCTGCTG
CTGGCTCCTGCATAAAGGACGACGGTACAGTGCAGTGCTTGTAGTCCTGTACGTTTCGTA
ATTTCCAGTCCAACTATATATATAGTTGTATGATGATGTGATGTTATCAAGTATGTGTGC
GTGACTATAAATGGAAAATATGCAATGCATTGTAAAAAAAAAAAA

Homology of Contig U35_690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32948.1	249	1e-129	protein\|OsMADS8 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi4g34680.1	248	6e-135
Arabidopsis v10	AT1G24260.2	251	4e-80	\| Symbols: SEP3, AGL9 \| K-box region and MADS-box transcription factor family protein \| chr1:8593790-8595862 REVERSE LENGTH=251