barSeed - Barley Seed Development Database

Probe CUST_40955_PI390587928

Source Contig U35_47578

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40955_PI390587928	Hv_44K_v2	ATGCAGTTATGGTGGGCCAGATACAGCAATACAAAATAAGGAGAATGAGTTAGTGCAGAG	574	GeneList: paleturquoise MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.670	5.649	1.390	0.813	0.456	0.520
Raw	491.293	331.236	81.669	78.095	14.237	18.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374424	1326	2e-24	434 - 493	100	60 / 60	plus	ABC02198 ABC02200
Harvest21	ABC48746	634	3e-25	575 - 634	100	60 / 60	plus
Harvest21	ABC02198	1406	3e-25	473 - 532	100	60 / 60	plus	ABC02198
Harvest35	U35_47578	634	3e-25	575 - 634	100	60 / 60	plus
Harvest35	U35_690	1425	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_47578 634 Hv_44K_v2
GGAGAGAGCGGGCTCTAGGGTTTCGCGGCTCCCACCTTGACGGAAATGGCAATGGTGGTG
TGCGCAGCGCCCTAATCACTCGCCCAGCCCCGCTTTTAACCCGCCTCCCCCACCGCTCCG
CCCCCATCCCGTCCAGCCCCCTCCCCCGCTTTCCCTTTCCCCTTTCCCCTCTCCCTTCCG
CTCCAGCGCGCGCGCGAGAGCTAGCTTCTCTTCGCTTCTCGGTTAGCTGAGCTGATTTGG
TGGACGGAGGTGGTGGTGTGGGAGCGGCTGAGAGGCGCCGTGGCGTGGGTGGCAGGAGGA
GGAGGAGGCTGATCGATCTGGAGCTAGCGGTACCGGACGCGGCGGCCGGCGGCGGCGGCA
TGGGGCGGGGCCGGGTCGAGCTCAAGCGGATCGAGAACAAGATCAACCGCCAGGTCACCT
TCGCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCCTACGAGCTCTCCGTGCTCTGCGATG
CCGAGGTCGCCCTCATCATCTTCTCCAACCGCGGCAAGCTCTACGAGTTCTGCAGCGGCC
AGAGCATGCCCAAAACACTTGAGAGATACCAAAAATGCAGTTATGGTGGGCCAGATACAG
CAATACAAAATAAGGAGAATGAGTTAGTGCAGAG

Homology of Contig U35_47578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g34680.1	248	3e-52
Arabidopsis v10	None