barSeed - Barley Seed Development Database

Probe ABC01865

Source Contig ABC01865

barSeed

Links

Affymetrix Source Sequence (1235 bp)

>ABC01865 1235
GCTTACAAGCATGGCTTCTTCTTCTACTTCCACTCGGGTCGTCTCCCAGCTGGGCGCCGC
CGGCTTGGCGGCGCTTCTCGCGGCTGTCTGCCTCCTCCACGCCGGCGGGGTGGCGGCGGC
GGAGCTGTGCGTGGACTACTACGACTGCACGTGCCCGGACGCCTACAAGATCGTGCAGGG
GGTCCTGGTGGAGGCGCACCAGTCGGACCCTCGCATCTTCGCCAGCCTCATCCGCCTCCA
CTTCCACGACTGCTTCGTGCAGGGCTGCGACGGCTCGCTGCTGCTGGACACCTTCGACGG
GATGGAGTCGGAGAAGGACGCGCGGCCCAACAACGGCTCGGCGCGCGGCTACGACGTCGT
GGACGCCGCCAAGGCCGCCCTCGAGGACGCCTGCCCCGGCGTCGTCTCCTGCGCCGACAT
CCTCGCACTTGCCGCCGAGATCTCGGTCGAGCTGTCAGGAGGACCCGGTTGGAGCGTGCT
GCTGGGGAGGCTGGACGGCCTCACGTCCAGCAAAGCCGACGCCGAGAACCTACCAGGACC
CTTCGACGGCCTGGACGTGCTCAGAGCCAAGTTCCGGAACGCCACACTCGACGACACCAC
CGACCTCGTCGCCCTCTCAGGTGCCCACACTTTTGGCCGCGTGCAATGCCAGTTCGTCAC
GGACCGGCTGTACAACTTCAGCGGGACGAACCAGCCCGACCCGACCCTCGACTCGGCATA
CCGAGCATTCCTCTCCCAGAGATGCCCGAGGAATGGCGACGGGTCGTCCCTGAACGACCT
CGACCCGACGACGCCTGACAACTTCGACAAGAACTACTTCACGAACCTCGAGGTGAACCG
CGGCTTCCTGCAGTCTGACCAGGAGCTCAAGTCAGACCCCAGCGCGGCGGGGACGACGGC
GCCGATCGTCGACAGGTTCGCGGGCAGCCAGGACGCCTTCTTCAGTAGCTTCGCGAATTC
TATGATCAAGATGGGGAACATTAGGCCGGTCACGGATCCCTCCCAGGGAGAAGTTCGTGC
CCGGTGCGCGTTTGTCAATTCAGATTAGCGGGGAAGACCATGTTTGGATATACATATACA
CAAGTGTGGCATGGTCTTGGATGTAAGGATGAATTCATCTCTTATCGTCCAGTGTAATAA
TTGGTATATGTGTCAACCAATATGTAAACATTTCATGCATGCTTGTTCTCTGATGTGGAA
TAGACTGAAATTTGTATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_60157.3	1452	0.0	314 - 1452	100	1139 / 1139	None	ABC01865 ABC01867 ABC12944
MLOC_60157.1	1007	0.0	277 - 1007	100	731 / 731	None	ABC01865 ABC01867 ABC12944
MLOC_60157.4	917	0.0	231 - 917	100	687 / 687	None	ABC01865 ABC01867
MLOC_60157.2	2016	1e-83	1078 - 1246	100	169 / 169	CUST_34674_PI390587928	ABC01865 ABC01867 ABC12944
AK252669.1	1234	0.0	52 - 1215	84	984 / 1172	None	ABC01865 ABC01867
MLOC_20914.1	1126	0.0	402 - 968	87	494 / 567	None	ABC01865 ABC01867
MLOC_20914.3	612	2e-176	31 - 528	89	444 / 498	None	ABC01865 ABC01867
MLOC_20914.2	1529	4e-148	889 - 1287	90	361 / 399	None	ABC01865 ABC01867 ABC12944
MLOC_79167.1	965	3e-120	203 - 803	80	489 / 608	CUST_5204_PI390587928	ABC01865 ABC01867
MLOC_62332.3	1266	3e-115	266 - 1078	76	631 / 827	CUST_33642_PI390587928	ABC01865 ABC01867 ABC12944
MLOC_62332.1	1269	2e-111	266 - 1081	76	631 / 830	CUST_33642_PI390587928	ABC01865 ABC01867 ABC12944
MLOC_62332.2	1271	1e-108	266 - 1083	76	631 / 832	CUST_33642_PI390587928	ABC01865 ABC12944
MLOC_62332.5	1206	4e-59	240 - 682	76	344 / 450	None	ABC01865 ABC01867 ABC12944
MLOC_62332.4	1043	2e-52	245 - 519	81	223 / 277	CUST_17381_PI390587928 CUST_28047_PI390587928	ABC01865 ABC12944