barSeed - Barley Seed Development Database

Probe CUST_34674_PI390587928

Source Contig U35_13851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34674_PI390587928	Hv_44K_v2	GTAAACATTTCATGCATGCTTGTTCTCTGATGTGGAATAGACTGAAATTTGTATTCCCAA	1173	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.653	4.204	1.348	0.763	0.305	0.385
Raw	80.379	139.260	43.046	40.615	3.332	6.739

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60157.2	2016	2e-23	1900 - 1957	100	58 / 58	plus	ABC01865 ABC01867 ABC12944
JLOC1	JLOC1_39205.2	972	1e-23	803 - 860	100	58 / 58	plus
JLOC1	JLOC1_39205.1	1524	1e-23	1355 - 1412	100	58 / 58	plus
Harvest21	ABC01865	1235	2e-22	1164 - 1218	100	55 / 55	plus	ABC01865
Harvest35	U35_13851	1248	3e-25	1174 - 1233	100	60 / 60	plus

Contig Sequence (1248 bp)

>U35_13851 1248 Hv_44K_v2
GGCATCAGCCTCTTACAAGCATGGCTTCTTCTTCTACTTCCACTCGGGTCGTCTCCCAGC
TGGGCGCCGCCGGCTTGGCGGCGCTTCTCGCGGCTGTCTGCCTCCTCCACGCCGGCGGGG
TGGCGGCGGCGGAGCTGTGCGTGGACTACTACGACTGCACGTGCCCGGACGCCTACAAGA
TCGTGCAGGGGGTCCTGGTGGAGGCGCACCAGTCGGACCCTCGCATCTTCGCCAGCCTCA
TCCGCCTCCACTTCCACGACTGCTTCGTGCAGGGCTGCGACGGCTCGCTGCTGCTGGACA
CCTTCGACGGGATGGAGTCGGAGAAGGACGCGCGGCCCAACAACGGCTCGGCGCGCGGCT
ACGACGTCGTGGACGCCGCCAAGGCCGCCCTCGAGGACGCCTGCCCCGGCGTCGTCTCCT
GCGCCGACATCCTCGCACTTGCCGCCGAGATCTCGGTCGAGCTGTCAGGAGGACCCGGTT
GGAGCGTGCTGCTGGGGAGGCTGGACGGCCTCACGTCCAGCAAAGCCGACGCCGAGAACC
TACCAGGACCCTTCGACGGCCTGGACGTGCTCAGAGCCAAGTTCCGGAACGCCACACTCG
ACGACACCACCGACCTCGTCGCCCTCTCAGGTGCCCACACTTTTGGCCGCGTGCAATGCC
AGTTCGTCACGGACCGGCTGTACAACTTCAGCGGGACGAACCAGCCCGACCCGACCCTCG
ACTCGGCATACCGAGCATTCCTCTCCCAGAGATGCCCGAGGAATGGCGACGGGTCGTCCC
TGAACGACCTCGACCCGACGACGCCTGACAACTTCGACAAGAACTACTTCACGAACCTCG
AGGTGAACCGCGGCTTCCTGCAGTCTGACCAGGAGCTCAAGTCAGACCCCAGCGCGGCGG
GGACGACGGCGCCGATCGTCGACAGGTTCGCGGGCAGCCAGGACGCCTTCTTCAGTAGCT
TCGCGAATTCTATGATCAAGATGGGGAACATTAGGCCGGTCACGGATCCCTCCCAGGGAG
AAGTTCGTGCCCGGTGCGCGTTTGTCAATTCAGATTAGCGGGGAAGACCATGTTTGGATA
TACATATACACAAGTGTGGCATGGTCTTGGATGTAAGGATGAATTCATCTCTTATCGTCC
AGTGTAATAATTGGTATATGTGTCAACCAATATGTAAACATTTCATGCATGCTTGTTCTC
TGATGTGGAATAGACTGAAATTTGTATTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g02040.1	337	1e-162	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g27920.1	342	0.0
Arabidopsis v10	AT5G06730.1	358	1e-112	Peroxidase superfamily protein \| chr5:2080207-2081621 REVERSE LENGTH=358