barSeed - Barley Seed Development Database

Probe ABC01791

Source Contig ABC01791

barSeed

Links

Affymetrix Source Sequence (1804 bp)

>ABC01791 1804
CAGCCACTCCTCCCTCCCTCCCAATCACTCTTCTTCCTCCTCCGCCAGATCCGATCCACC
AACCTTCTCCATGGCGCTCTCCGTGGAGAAGACCTCGTCTGGCCGGGAGTACAAGGTCAA
GGACCTCTCCCAGGCCGACTTCGGCCGCCTCGAGCTCGAGCTGGCCGAGGTCGAGATGCC
CGGCCTCATGGCCTGCCGCACCGAGTTCGGCCCCTCGCAGCCCTTCAAGGGCGCCCGGAT
CTCCGGCTCCCTCCACATGACTATCCAGACCGCCGTGCTCATCGAGACCCTCACCGCCCT
CGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCCACCCAGGACCACGCCGCCGC
CGCCATCGCCCGCGACTCGGCCGCCGTCTTCGCCTGGAAGGGCGAGACCCTCGAGGAGTA
CTGGTGGTGCACCGAGCGCTGCCTCGACTGGGGCGCCGGCGGCGGCCCCGACCTCATCGT
CGACGACGGCGGCGACGCCACGCTGCTCATCCACGAGGGCGTCAAGGCCGAGGAGGAGTT
CGAGAAGTCCGGCAAGGTCCCCGACCCGGAGTCCACCGACAACCCCGAGTTCAAGATCGT
CCTCACCATCATCCGCGACGGCCTCAAGACCGACGCCAGCAAGTACCGCAAGATGAAGGA
GAGGCTCGTCGGTGTCTCCGAGGAGACCACCACCGGCGTCAAGAGGCTCTACCAGATGCA
GGAGTCCGGCACCCTCCTTTTCCCCGCCATCAACGTCAACGACTCCGTCACCAAGAGCAA
GTTTGACAACCTTTACGGTTGCCGTCACTCTCTCCCTGACGGTCTCATGAGGGCCACTGA
TGTTATGATTGCCGGTAAGGTCGCCGTGGTCTGCGGTTATGGTGATGTTGGCAAGGGCTG
TGCCGCCGCACTCAAGCAGGCTGGTGCCCGTGTGATCGTGACAGAGATCGACCCCATCTG
TGCTCTTCAGGCCCTGATGGAGGGCATCCAGATCCTCACCTTGGAGGATGTTGTCTCTGA
GGCTGATATCTTTGTGACCACCACCGGAAACAAGGACATCATCATGGTTGACCACATGAG
GAAGATGAAGAACAACGCCATTGTCTGCAACATTGGTCACTTTGACAACGAGATCGACAT
GAACGGCCTTGAGACCTACCCCGGTGTCAAGCGCATCACCATCAAGCCCCAGACTGACCG
CTGGGTCTTCCCTGAGACCAAGACCGGCATCATTGTTCTTGCTGAGGGTCGTCTGATGAA
CCTTGGATGTGCCACTGGCCACCCCAGCTTTGTCATGTCCTGCTCTTTCACTAACCAGGT
TATTGCCCAGCTCGAGTTGTGGAACGAGAAGGCCAGCGGCAAGTACGAGAAGAAGGTGTA
CGTTCTCCCCAAGCACCTCGACGAGAAGGTTGCGGCCCTCCACTTGGGCAAGCTCGGCGC
CAGGCTGACCAAGCTCACCAAGTCCCAGTCTGACTACATTAGCATCCCGATCGAGGGTCC
CTACAAGCCCGCGGCCTACCGGTACTAGTGTGTCCAGCACGACTAGCGGCTGGCCTGAGC
CTGAGTCTGAGCAGCGGCGCCAACGGGAACTCTGCCACGGCGACCTATCAACTATCCTGT
TTCCCTTCCATTATCTTACATGCTGTCTCTTAGGCGGAGGATTTGTTATTACGGTTATGT
TTTGAGCCTTGTGAGGGTTGGGAGAGGCTGCGTTTGCTTTTGCCCAGAAATAATGCCATT
ATCATTGGTTTAAAAAAAAAAAAAAAAAGTGGTGTGCTTTTCCGTAAAAAAAAAAAAAAA
AAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK253091.1	1845	0.0	9 - 1757	99	1747 / 1749	CUST_6722_PI390587928	ABC01790 ABC01791 ABC01794 ABC46857
AK357003	1753	0.0	26 - 1734	93	1603 / 1719	CUST_6723_PI390587928	ABC01791 ABC01794 ABC47129
MLOC_73371.1	1032	0.0	1 - 1032	99	1029 / 1032	None	ABC01791 ABC01794 ABC46857
MLOC_80737.2	1399	0.0	1 - 1293	92	1194 / 1302	CUST_6723_PI390587928	ABC01791 ABC01794 ABC47129
MLOC_80737.1	1211	0.0	1 - 1031	95	981 / 1031	None	ABC01791 ABC01794 ABC47129
MLOC_23053.1	644	1e-60	499 - 644	96	140 / 146	None	ABC01791 ABC01794
MLOC_77533.1	616	2e-138	292 - 616	94	307 / 326	None	ABC01791 ABC01794
MLOC_29296.1	254	1e-130	1 - 254	100	254 / 254	None	ABC01791 ABC01794
MLOC_49961.1	273	1e-115	3 - 273	95	258 / 273	None	ABC01791 ABC01794
MLOC_25561.1	269	2e-113	1 - 268	94	254 / 269	None	ABC01791 ABC01794
MLOC_470.1	278	7e-113	6 - 278	94	257 / 274	None	ABC01791 ABC01794
MLOC_35272.1	221	1e-105	1 - 221	98	217 / 221	None	ABC01791 ABC01794
MLOC_22206.1	247	1e-95	4 - 242	93	223 / 239	None	ABC01791 ABC01794
MLOC_25513.1	221	9e-92	2 - 221	95	208 / 220	None	ABC01791 ABC01794
MLOC_35875.1	188	4e-75	3 - 182	95	173 / 182	None	ABC01791
MLOC_24928.1	165	3e-66	1 - 165	95	157 / 166	None	ABC01791 ABC01794
MLOC_469.1	153	2e-58	12 - 153	96	137 / 143	None	ABC01791